› 2kmn

Solution NMR

Solution structure of peptide deformylase complexed with actinonin

Released:
DOI: 10.2210/pdb2kmn/pdb
PDB entry 2kmn coloured by chain, ensemble of 20 models, front view.
PDB entry 2kmn coloured by chain, ensemble of 20 models, side view.
PDB entry 2kmn coloured by chain, ensemble of 20 models, top view.
Source organism: Escherichia coli K-12
Entry authors: McElroy CA, Amero CD, Byerly DW, Foster MP

Function and Biology Details

Reaction catalysed: 
Formyl-L-methionyl peptide + H(2)O = formate + methionyl peptide
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-141367 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptide deformylase Chain: A
Molecule details ›
Chain: A
Length: 147 amino acids
Theoretical weight: 16.66 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0A6K3 (Residues: 2-148; Coverage: 87%)
Gene names: JW3248, b3287, def, fms
Sequence domains: Polypeptide deformylase
Structure domains: Peptide deformylase

Ligands and Environments

2 bound ligands:
Ligand ZN 1 x ZN
Ligand BB2 1 x BB2
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Escherichia coli

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