› 2jz5

Solution NMR

NMR solution structure of protein VPA0419 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR68

Released:
DOI: 10.2210/pdb2jz5/pdb
PDB entry 2jz5 coloured by chain, ensemble of 20 models, front view.
PDB entry 2jz5 coloured by chain, ensemble of 20 models, side view.
PDB entry 2jz5 coloured by chain, ensemble of 20 models, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Primary publication:
Solution NMR structures of proteins VPA0419 from Vibrio parahaemolyticus and yiiS from Shigella flexneri provide structural coverage for protein domain family PFAM 04175.
Singarapu KK, Mills JL, Xiao R, Acton T, Punta M, Fischer M, Honig B, Rost B, Montelione GT, Szyperski T
Proteins 78 779-84 (2010)
PMID: 19927321

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183326 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Uncharacterized protein VPA0419 Chain: A
Molecule details ›
Chain: A
Length: 91 amino acids
Theoretical weight: 10.3 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87J34 (Residues: 17-99; Coverage: 84%)
Gene name: VPA0419
Sequence domains: Protein of unknown function (DUF406)
Structure domains: Alpha-Beta Plaits

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 94%
Refinement method: simulated annealing
Expression system: Escherichia coli

Quick links

Citations

3 mentions without citation

A microscale protein NMR sample screening pipeline.
Rossi et al. (2010)
2 more