Function and Biology

Crystal Structure of human RanGAP1-Ubc9-D127S

Source organism: Homo sapiens
Biochemical function: GTPase activator activity
Biological process: signal transduction
Cellular component: transferase complex

Sequence families

Pfam Protein families (Pfam)
PF07834
Domain description: RanGAP1 C-terminal domain
Occurring in:
  1. Ran GTPase-activating protein 1
The deposited structure of PDB entry 2grr contains 1 copy of Pfam domain PF07834 (RanGAP1 C-terminal domain) in Ran GTPase-activating protein 1. Showing 1 copy in chain B.

PF00179
Domain description: Ubiquitin-conjugating enzyme
Occurring in:
  1. SUMO-conjugating enzyme UBC9
The deposited structure of PDB entry 2grr contains 1 copy of Pfam domain PF00179 (Ubiquitin-conjugating enzyme) in SUMO-conjugating enzyme UBC9. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR000608
Domain description: Ubiquitin-conjugating enzyme E2
Occurring in:
  1. SUMO-conjugating enzyme UBC9
IPR036720
Domain description: Ran-GTPase activating protein 1, C-terminal domain superfamily
Occurring in:
  1. Ran GTPase-activating protein 1
IPR016135
Domain description: Ubiquitin-conjugating enzyme/RWD-like
Occurring in:
  1. SUMO-conjugating enzyme UBC9
IPR009109
Domain description: Ran-GTPase activating protein 1, C-terminal
Occurring in:
  1. Ran GTPase-activating protein 1
IPR023313
Domain description: Ubiquitin-conjugating enzyme, active site
Occurring in:
  1. SUMO-conjugating enzyme UBC9

Structure domains

CATH CATH domains
1.25.40.200
Class: Mainly Alpha
Architecture: Alpha Horseshoe
Topology: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homology: Ran-GTPase activating protein 1, C-terminal domain
Occurring in:
  1. Ran GTPase-activating protein 1
The deposited structure of PDB entry 2grr contains 1 copy of CATH domain 1.25.40.200 (Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat) in Ran GTPase-activating protein 1. Showing 1 copy in chain B.
3.10.110.10
Class: Alpha Beta
Architecture: Roll
Topology: Ubiquitin Conjugating Enzyme
Homology: Ubiquitin Conjugating Enzyme
Occurring in:
  1. SUMO-conjugating enzyme UBC9
The deposited structure of PDB entry 2grr contains 1 copy of CATH domain 3.10.110.10 (Ubiquitin Conjugating Enzyme) in SUMO-conjugating enzyme UBC9. Showing 1 copy in chain A.
SCOP SCOP annotation
69100
Class: All alpha proteins
Fold: alpha-alpha superhelix
Superfamily: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
Occurring in:
  1. Ran GTPase-activating protein 1
The deposited structure of PDB entry 2grr contains 1 copy of SCOP domain 69100 (Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain) in Ran GTPase-activating protein 1. Showing 1 copy in chain B.