2b5l

X-ray diffraction
2.85Å resolution

Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
DNA damage-binding protein 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 1140 amino acids
Theoretical weight: 127.12 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q16531 (Residues: 1-1140; Coverage: 100%)
Gene names: DDB1, XAP1
Sequence domains:
Structure domains:
Non-structural protein V Chains: C, D
Molecule details ›
Chains: C, D
Length: 222 amino acids
Theoretical weight: 23.97 KDa
Source organism: Mammalian rubulavirus 5
Expression system: Escherichia coli
UniProt:
  • Canonical: P11207 (Residues: 1-222; Coverage: 100%)
Gene name: P/V
Sequence domains:

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.2
Spacegroup: P21
Unit cell:
a: 62.758Å b: 240.792Å c: 117.177Å
α: 90° β: 101.787° γ: 90°
R-values:
R R work R free
0.23 0.229 0.299
Expression systems:
  • Spodoptera frugiperda
  • Escherichia coli