X-ray diffraction
1.48Å resolution

Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633

Entry authors: Tan K, Duggan E, Moy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
NYN domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 165 amino acids
Theoretical weight: 18.99 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli BL21
  • Canonical: Q9AF14 (Residues: 1-162; Coverage: 100%)
Gene names: ACS84_04540, BS585_17370, C9I78_17940, CA163_03205, CGH73_12500, D5E78_24525, EHC69_24320, HKB16_12075, HKB21_11250, I5M77_24840, JCT83_18665, JCT85_18705, JCT86_18950
Sequence domains: NYN domain
Structure domains: 5'-nuclease

Ligands and Environments

1 bound ligand:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: I222
Unit cell:
a: 62.207Å b: 75.034Å c: 80.418Å
α: 90° β: 90° γ: 90°
R R work R free
0.163 0.162 0.183
Expression system: Escherichia coli BL21