X-ray diffraction
1.7Å resolution

Crystal structure of uncharacterized peroxidase-related protein (YP_614459.1) from Silicibacter sp. TM1040 at 1.70 A resolution

Source organism: Ruegeria sp. TM1040
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Entry contents:
1 distinct polypeptide molecule
CMD domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 191 amino acids
Theoretical weight: 22.11 KDa
Source organism: Ruegeria sp. TM1040
Expression system: Escherichia coli
  • Canonical: Q1GDR9 (Residues: 1-190; Coverage: 100%)
Gene name: TM1040_2465
Sequence domains: Carboxymuconolactone decarboxylase family
Structure domains:

Ligands and Environments

3 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P63
Unit cell:
a: 85.069Å b: 85.069Å c: 105.616Å
α: 90° β: 90° γ: 120°
R R work R free
0.117 not available 0.165
Expression system: Escherichia coli