› 2dog

Solution NMR

Solution structure of the N-terminal domain of RimM from Thermus thermophilus HB8

Released:
DOI: 10.2210/pdb2dog/pdb
PDB entry 2dog coloured by chain, ensemble of 20 models, front view.
PDB entry 2dog coloured by chain, ensemble of 20 models, side view.
PDB entry 2dog coloured by chain, ensemble of 20 models, top view.
Source organism: Thermus thermophilus HB8
Primary publication:
Structural characterization of the ribosome maturation protein, RimM.
Suzuki S, Tatsuguchi A, Matsumoto E, Kawazoe M, Kaminishi T, Shirouzu M, Muto Y, Takemoto C, Yokoyama S
J Bacteriol 189 6397-406 (2007)
PMID: 17616598

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178020 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ribosome maturation factor RimM Chain: A
Molecule details ›
Chain: A
Length: 85 amino acids
Theoretical weight: 9.49 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5SJH5 (Residues: 1-85; Coverage: 53%)
Gene names: TTHA1033, rimM
Sequence domains: RimM N-terminal domain
Structure domains: RimM

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dyanamics, simulated annealing
Expression system: Escherichia coli

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Citations

1 review citation

Protein Assistants of Small Ribosomal Subunit Biogenesis in Bacteria.
Maksimova et al. (2022)
8 other articles

5 mentions without citation

Chemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field.
Nielsen et al. (2012)
4 more