1zii Citations

Crystal structures of a single coiled-coil peptide in two oligomeric states reveal the basis for structural polymorphism.

Nat Struct Biol 3 1002-9 (1996)
Related entries: 1gcl, 1swi, 1zij, 2zta

Cited: 60 times
EuropePMC logo PMID: 8946853

Abstract

Each protein sequence generally adopts a single native fold, but the sequence features that confer structural uniqueness are not well understood. To define the basis for structural heterogeneity, we determined the high resolution X-ray crystal structures of a single GCN4 leucine-zipper mutant (Asn 16 to aminobutyric acid) in both dimeric and trimeric coiled-coil conformations. The mutant sequence is accommodated in two distinct structures by forming similarly-shaped packing surfaces with different sets of atoms. The trimer structure, in comparison to a previously-characterized trimeric mutant with substitutions in eight core residues, shows that the twist of individual helices and the helix-helix crossing angles can vary significantly to produce the most favoured packing arrangement.

Articles - 1zii mentioned but not cited (2)

  1. Electrostatic contributions to the stability of the GCN4 leucine zipper structure. Matousek WM, Ciani B, Fitch CA, Garcia-Moreno B, Kammerer RA, Alexandrescu AT. J. Mol. Biol. 374 206-219 (2007)
  2. Nuclear Magnetic Resonance Structures of GCN4p Are Largely Conserved When Ion Pairs Are Disrupted at Acidic pH but Show a Relaxation of the Coiled Coil Superhelix. Kaplan AR, Brady MR, Maciejewski MW, Kammerer RA, Alexandrescu AT. Biochemistry 56 1604-1619 (2017)


Reviews citing this publication (6)

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  5. Analysis and design of three-stranded coiled coils and three-helix bundles. Schneider JP, Lombardi A, DeGrado WF. Fold Des 3 R29-40 (1998)
  6. Complementary packing of alpha-helices in proteins. Efimov AV. FEBS Lett. 463 3-6 (1999)

Articles citing this publication (52)

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  13. Crystal structure of tetranectin, a trimeric plasminogen-binding protein with an alpha-helical coiled coil. Nielsen BB, Kastrup JS, Rasmussen H, Holtet TL, Graversen JH, Graversen JH, Etzerodt M, Thøgersen HC, Larsen IK. FEBS Lett. 412 388-396 (1997)
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  16. De novo design of a model peptide sequence to examine the effects of single amino acid substitutions in the hydrophobic core on both stability and oligomerization state of coiled-coils. Wagschal K, Tripet B, Hodges RS. J. Mol. Biol. 285 785-803 (1999)
  17. Energy functions for protein design I: efficient and accurate continuum electrostatics and solvation. Pokala N, Handel TM. Protein Sci. 13 925-936 (2004)
  18. The structure of the coiled-coil domain of Ndel1 and the basis of its interaction with Lis1, the causal protein of Miller-Dieker lissencephaly. Derewenda U, Tarricone C, Choi WC, Cooper DR, Lukasik S, Perrina F, Tripathy A, Kim MH, Cafiso DS, Musacchio A, Derewenda ZS. Structure 15 1467-1481 (2007)
  19. Coiled coils at the edge of configurational heterogeneity. Structural analyses of parallel and antiparallel homotetrameric coiled coils reveal configurational sensitivity to a single solvent-exposed amino acid substitution. Yadav MK, Leman LJ, Price DJ, Brooks CL, Stout CD, Ghadiri MR. Biochemistry 45 4463-4473 (2006)
  20. Fluorinated Coiled-Coil Proteins Prepared In Vivo Display Enhanced Thermal and Chemical Stability This work was supported by a grant from the U.S. Army Research Office. Y. Tang is supported by a Whitaker Graduate Research Fellowship. We thank Dr. Gary Hathaway for performing matrix-assisted laser desorption/ionization analyses. Tang Y, Ghirlanda G, Petka WA, Nakajima T, DeGrado WF, Tirrell DA. Angew. Chem. Int. Ed. Engl. 40 1494-1496 (2001)
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  23. The structure of bacteriophage T4 gene product 9: the trigger for tail contraction. Kostyuchenko VA, Navruzbekov GA, Kurochkina LP, Strelkov SV, Mesyanzhinov VV, Rossmann MG. Structure 7 1213-1222 (1999)
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  39. Crystal structure of a trimeric form of the K(V)7.1 (KCNQ1) A-domain tail coiled-coil reveals structural plasticity and context dependent changes in a putative coiled-coil trimerization motif. Xu Q, Minor DL. Protein Sci. 18 2100-2114 (2009)
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  43. X-ray structure of a water-soluble analog of the membrane protein phospholamban: sequence determinants defining the topology of tetrameric and pentameric coiled coils. Slovic AM, Stayrook SE, North B, Degrado WF. J. Mol. Biol. 348 777-787 (2005)
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  45. Exploring alternate states and oligomerization preferences of coiled-coils by de novo structure modeling. Rämisch S, Lizatović R, André I. Proteins 83 235-247 (2015)
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  50. A conserved oligomerization domain in the disordered linker of coronavirus nucleocapsid proteins. Zhao H, Wu D, Hassan SA, Nguyen A, Chen J, Piszczek G, Schuck P. Sci Adv 9 eadg6473 (2023)
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  52. Lead(II) Binding in Natural and Artificial Proteins. Cangelosi V, Ruckthong L, Pecoraro VL. Met Ions Life Sci 17 (2017)


Related citations provided by authors (4)

  1. An engineered allosteric switch in leucine-zipper oligomerization.. Gonzalez L, Plecs JJ, Alber T Nat Struct Biol 3 510-5 (1996)
  2. Crystal Structure of an Isoleucine-Zipper Trimer. Harbury PB, Kim PS, Alber T Nature 371 80- (1994)
  3. A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants.. Harbury PB, Zhang T, Kim PS, Alber T Science 262 1401-7 (1993)
  4. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.. O'Shea EK, Klemm JD, Kim PS, Alber T Science 254 539-44 (1991)