› 1yg4

Solution NMR

Solution Structure of the ScYLV P1-P2 Frameshifting Pseudoknot, Regularized Average Structure

Released:
DOI: 10.2210/pdb1yg4/pdb
PDB entry 1yg4 coloured by chain, front view.
PDB entry 1yg4 coloured by chain, side view.
PDB entry 1yg4 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting.
Cornish PV, Hennig M, Giedroc DP
Proc Natl Acad Sci U S A 102 12694-9 (2005)
PMID: 16123125

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196261 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
ScYLV RNA pseudoknot Chain: A
Molecule details ›
Chain: A
Length: 28 nucleotides
Theoretical weight: 9 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand CH 1 x CH

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Not provided

Quick links

Citations

12 review citations

RNA folding: conformational statistics, folding kinetics, and ion electrostatics.
Chen SJ. (2008)
11 more

13 mentions without citation

Frameshifting RNA pseudoknots: structure and mechanism.
Giedroc et al. (2009)
12 more