› 1xjr

X-ray diffraction
2.7Å resolution

The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome

Released:
DOI: 10.2210/pdb1xjr/pdb
PDB 1xjr coloured by chain and viewed from the front.
PDB 1xjr coloured by chain and viewed from the side.
PDB 1xjr coloured by chain and viewed from the top.
Source organism: Severe acute respiratory syndrome-related coronavirus
Primary publication:
The structure of a rigorously conserved RNA element within the SARS virus genome.
Robertson MP, Igel H, Baertsch R, Haussler D, Ares M, Scott WG
OpenAccess logo PLoS Biol. 3 e5 (2005)
PMID: 15630477

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
s2m RNA Chain: A
Molecule details ›
Chain: A
Length: 47 nucleotides
Theoretical weight: 15.44 KDa
Source organism: Severe acute respiratory syndrome-related coronavirus
Expression system: Not provided
Sequence domains: Coronavirus 3' stem-loop II-like motif (s2m)

Ligands and Environments

1 bound ligand:
Ligand MG 2 x MG
1 modified residue:
Ligand GTP 1 x GTP

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-1
Spacegroup: P6522
Unit cell:
a: 93.218Å b: 93.218Å c: 128.109Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.232 0.231 0.243
Expression system: Not provided

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Citations

11 review citations

ACE2 enhance viral infection or viral infection aggravate the underlying diseases.
Teng et al. (2020)
10 more

9 mentions without citation

On the significance of an RNA tertiary structure prediction.
Hajdin et al. (2010)
8 more