PDBe 1vps

X-ray diffraction
1.9Å resolution

POLYOMAVIRUS VP1 PENTAMER COMPLEXED WITH A DISIALYLATED HEXASACCHARIDE

Released:

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assemblies composition:
homo pentamer (preferred)
homo decamer
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein VP1 Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 289 amino acids
Theoretical weight: 32.09 KDa
Source organism: Mus musculus polyomavirus 1
Expression system: Escherichia coli
UniProt:
  • Canonical: P49302 (Residues: 33-321; Coverage: 75%)
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

3 bound ligands:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: P3121
Unit cell:
a: 221.5Å b: 221.5Å c: 99.8Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.177 0.177 0.205
Expression system: Escherichia coli