X-ray diffraction
1.35Å resolution

Phospholipase D from Streptomyces sp. strain PMF soaked with the substrate dibutyrylphosphatidylcholine.


Function and Biology Details

Reaction catalysed:
A phosphatidylcholine + H(2)O = choline + a phosphatidate
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
PLD phosphodiesterase domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 506 amino acids
Theoretical weight: 54.06 KDa
Source organism: Streptomyces sp. PMF
  • Canonical: P84147 (Residues: 1-506; Coverage: 100%)
Sequence domains: PLD-like domain
Structure domains: Endonuclease Chain A

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM1A
Spacegroup: P21
Unit cell:
a: 57.227Å b: 56.37Å c: 68.631Å
α: 90° β: 93.69° γ: 90°
R R work R free
0.162 0.161 0.186