Function and Biology

NMR Structure of the MLV encapsidation signal bound to the Nucleocapsid protein

Source organism: Moloney murine leukemia virus
Biochemical function: zinc ion binding
Biological process: not assigned
Cellular component: not assigned

GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Sequence families

Pfam Protein family (Pfam)
PF00098
Domain description: Zinc knuckle
Occurring in:
  1. Nucleocapsid protein p10-Gag
The deposited structure of PDB entry 1u6p contains 1 copy of Pfam domain PF00098 (Zinc knuckle) in Nucleocapsid protein p10-Gag. Showing 1 copy in chain B [auth A].

Rfam RNA family (Rfam)
RF00374
Domain description: Gammaretrovirus core encapsidation signal
Occurring in:
  1. 101-MER
The deposited structure of PDB entry 1u6p contains 1 copy of Rfam domain RF00374 (Gammaretrovirus core encapsidation signal) in 101-MER. Showing 1 copy in chain A [auth B].

InterPro InterPro annotations
IPR001878
Domain description: Zinc finger, CCHC-type
Occurring in:
  1. Nucleocapsid protein p10-Gag
IPR036875
Domain description: Zinc finger, CCHC-type superfamily
Occurring in:
  1. Nucleocapsid protein p10-Gag

Structure domain

CATH CATH domain
4.10.60.10
Class: Few Secondary Structures
Architecture: Irregular
Topology: HIV-1 Nucleocapsid Protein
Homology: Zinc finger, CCHC-type
Occurring in:
  1. Nucleocapsid protein p10-Gag
The deposited structure of PDB entry 1u6p contains 1 copy of CATH domain 4.10.60.10 (HIV-1 Nucleocapsid Protein) in Nucleocapsid protein p10-Gag. Showing 1 copy in chain B [auth A].
SCOP SCOP annotation
57757
Class: Small proteins
Fold: Retrovirus zinc finger-like domains
Superfamily: Retrovirus zinc finger-like domains
Occurring in:
  1. Nucleocapsid protein p10-Gag
The deposited structure of PDB entry 1u6p contains 1 copy of SCOP domain 57757 (Retrovirus zinc finger-like domains) in Nucleocapsid protein p10-Gag. Showing 1 copy in chain B [auth A].