X-ray diffraction
2.1Å resolution

Crystal structure of yeast ymx7, an ADP-ribose-1''-monophosphatase, complexed with ADP

Source organism: Saccharomyces cerevisiae
Entry authors: Kumaran D, Swaminathan S, Burley SK, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Reaction catalysed:
ADP-D-ribose 1''-phosphate + H(2)O = ADP-D-ribose + phosphate
Biochemical function:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
homo dimer
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Probable ADP-ribose 1''-phosphate phosphatase YML087W Chain: A
Molecule details ›
Chain: A
Length: 284 amino acids
Theoretical weight: 32.11 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
  • Canonical: Q04299 (Residues: 1-284; Coverage: 100%)
Gene names: YM9582.12, YMR087W
Sequence domains: Macro-like domain
Structure domains: Leucine Aminopeptidase, subunit E, domain 1

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C
Spacegroup: C2
Unit cell:
a: 107.948Å b: 38.054Å c: 63.137Å
α: 90° β: 111.75° γ: 90°
R R work R free
0.19 0.19 0.244
Expression system: Escherichia coli