1sf5 Citations

Structural studies of two mutants of amicyanin from Paracoccus denitrificans that stabilize the reduced state of the copper.

Biochemistry 43 9372-80 (2004)
Related entries: 1sf3, 1sfd, 1sfh

Cited: 17 times
EuropePMC logo PMID: 15260480

Abstract

Mutation of Pro94 to phenylalanine or alanine significantly alters the redox properties of the type I copper center of amicyanin. Each mutation increases the redox midpoint potential (E(m)) value by at least 140 mV and shifts the pK(a) for the pH dependence of the E(m) value to a more acidic value. Atomic resolution (0.99-1.1 A) structures of both the P94F and P94A amicyanin have been determined in the oxidized and reduced states. In each amicyanin mutant, an electron-withdrawing hydrogen bond to the copper-coordinating thiolate sulfur of Cys92 is introduced by movement of the amide nitrogens of Phe94 and Ala94 much closer to the thiolate sulfur than in wild-type amicyanin. This is the likely explanation for the much more positive E(m) values which result from each of these mutations. The observed decrease in the pK(a) value for the pH dependence of the E(m) value that is seen in the mutants seems to be correlated with steric hindrance to the rotation of the His95 copper ligand which results from the mutations. In wild-type amicyanin the His95 side chain undergoes a redox and pH-dependent conformational change which accounts for the pH dependence of the E(m) value of amicyanin. The reduced P94A amicyanin exhibits two alternate conformations with the positions of the copper 1.4 A apart. In one of these conformations, a water molecule appears to have replaced Met98 as a copper ligand. The relevance of these structures to the electron transfer properties of P94F and P94A amicyanin are also discussed.

Reviews citing this publication (3)

  1. Cupredoxins--a study of how proteins may evolve to use metals for bioenergetic processes. Choi M, Davidson VL. Metallomics 3 140-151 (2011)
  2. Inner- and outer-sphere metal coordination in blue copper proteins. Warren JJ, Lancaster KM, Richards JH, Gray HB. J Inorg Biochem 115 119-126 (2012)
  3. Mechanisms for control of biological electron transfer reactions. Williamson HR, Dow BA, Davidson VL. Bioorg Chem 57 213-221 (2014)

Articles citing this publication (14)

  1. Protein control of true, gated, and coupled electron transfer reactions. Davidson VL. Acc Chem Res 41 730-738 (2008)
  2. Spectroscopic and DFT studies of second-sphere variants of the type 1 copper site in azurin: covalent and nonlocal electrostatic contributions to reduction potentials. Hadt RG, Sun N, Marshall NM, Hodgson KO, Hedman B, Lu Y, Solomon EI. J Am Chem Soc 134 16701-16716 (2012)
  3. Hydrogen Bonds Dictate the Coordination Geometry of Copper: Characterization of a Square-Planar Copper(I) Complex. Dahl EW, Szymczak NK. Angew Chem Int Ed Engl 55 3101-3105 (2016)
  4. A joint x-ray and neutron study on amicyanin reveals the role of protein dynamics in electron transfer. Sukumar N, Mathews FS, Langan P, Davidson VL. Proc Natl Acad Sci U S A 107 6817-6822 (2010)
  5. Ligand and loop variations at type 1 copper sites: influence on structure and reactivity. Dennison C. Dalton Trans 3436-3442 (2005)
  6. Defining the role of the axial ligand of the type 1 copper site in amicyanin by replacement of methionine with leucine. Choi M, Sukumar N, Liu A, Davidson VL. Biochemistry 48 9174-9184 (2009)
  7. Transient homodimer interactions studied using the electron self-exchange reaction. Sato K, Crowley PB, Dennison C. J Biol Chem 280 19281-19288 (2005)
  8. Modifications of laccase activities of copper efflux oxidase, CueO by synergistic mutations in the first and second coordination spheres of the type I copper center. Kataoka K, Kogi H, Tsujimura S, Sakurai T. Biochem Biophys Res Commun 431 393-397 (2013)
  9. NMR hyperfine shifts in blue copper proteins: a quantum chemical investigation. Zhang Y, Oldfield E. J Am Chem Soc 130 3814-3823 (2008)
  10. Correlation of rhombic distortion of the type 1 copper site of M98Q amicyanin with increased electron transfer reorganization energy. Ma JK, Mathews FS, Davidson VL. Biochemistry 46 8561-8568 (2007)
  11. Molecular dynamics of amicyanin reveals a conserved dynamical core for blue copper proteins. Rizzuti B, Sportelli L, Guzzi R. Proteins 74 961-971 (2009)
  12. Proline 96 of the copper ligand loop of amicyanin regulates electron transfer from methylamine dehydrogenase by positioning other residues at the protein-protein interface. Choi M, Sukumar N, Mathews FS, Liu A, Davidson VL. Biochemistry 50 1265-1273 (2011)
  13. Replacement of the axial copper ligand methionine with lysine in amicyanin converts it to a zinc-binding protein that no longer binds copper. Sukumar N, Choi M, Davidson VL. J Inorg Biochem 105 1638-1644 (2011)
  14. Characterization of the free energy dependence of an interprotein electron transfer reaction by variation of pH and site-directed mutagenesis. Dow BA, Davidson VL. Biochim Biophys Acta 1847 1181-1186 (2015)