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The structure of B19 parvovirus capsid

X-ray diffraction
3.5Å resolution
PDB entry 1s58 coloured by chain, front view.
PDB entry 1s58 coloured by chain, side view.
PDB entry 1s58 coloured by chain, top view.
Source organism: Human parvovirus B19
Assembly composition:
homo 60-mer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Minor capsid protein VP1
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Multimeric state: homo 60-mer
Accessible surface area: 873867.44 Å2
Buried surface area: 830406.45 Å2
Dissociation area: 151,090.29 Å2
Dissociation energy (ΔGdiss): 2,378.49 kcal/mol
Dissociation entropy (TΔSdiss): 362.13 kcal/mol
Symmetry number: 60
PDBe Complex ID: PDB-CPX-192956

Macromolecules

Minor capsid protein VP1
Chain: A
Length: 554 amino acids
Theoretical weight: 60.93 KDa
Source organism: Human parvovirus B19
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9PZT0 (Residues: 228-781; Coverage: 71%)
Gene name: vp
Pfam: Parvovirus coat protein VP2
InterPro:
CATH: Parvovirus coat protein VP1/VP2
SCOP: Parvoviridae-like VP
Minor capsid protein VP1 in PDB entry 1s58, assembly 1, front view.
Minor capsid protein VP1 in PDB entry 1s58, assembly 1, side view.
Minor capsid protein VP1 in PDB entry 1s58, assembly 1, top view.
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