1s58

X-ray diffraction
3.5Å resolution

The structure of B19 parvovirus capsid

Released:
Source organism: Human parvovirus B19
Primary publication:
The structure of human parvovirus B19.
Proc. Natl. Acad. Sci. U.S.A. 101 11628-33 (2004)
PMID: 15289612

Function and Biology Details

Reaction catalysed:
Phosphatidylcholine + H(2)O = 1-acylglycerophosphocholine + a carboxylate
Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assemblies composition:
homo 60-mer (preferred)
monomeric
homo pentamer
homo hexamer
homo icosamer
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Minor capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 554 amino acids
Theoretical weight: 60.93 KDa
Source organism: Human parvovirus B19
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9PZT0 (Residues: 228-781; Coverage: 71%)
Gene name: vp
Sequence domains: Parvovirus coat protein VP2
Structure domains: Parvovirus coat protein VP1/VP2

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 14-ID-B
Spacegroup: P213
Unit cell:
a: 351.393Å b: 351.393Å c: 351.393Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.313 0.313 0.316
Expression system: Spodoptera frugiperda