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Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization

Source organism: Rattus norvegicus
Biochemical function: not assigned
Biological process: not assigned
Cellular component: not assigned

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GO terms

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Sequence family

Pfam Protein family (Pfam)
PF17820
Domain description: PDZ domain
Occurring in:
  1. SH3 and multiple ankyrin repeat domains protein 1
The deposited structure of PDB entry 1q3o contains 2 copies of Pfam domain PF17820 (PDZ domain) in SH3 and multiple ankyrin repeat domains protein 1. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR001478
Domain description: PDZ domain
Occurring in:
  1. SH3 and multiple ankyrin repeat domains protein 1
IPR036034
Domain description: PDZ superfamily
Occurring in:
  1. SH3 and multiple ankyrin repeat domains protein 1
IPR041489
Domain description: PDZ domain 6
Occurring in:
  1. SH3 and multiple ankyrin repeat domains protein 1

Structure domain

CATH CATH domain
2.30.42.10
Class: Mainly Beta
Architecture: Roll
Topology: Pdz3 Domain
Homology: Pdz3 Domain
Occurring in:
  1. SH3 and multiple ankyrin repeat domains protein 1
The deposited structure of PDB entry 1q3o contains 2 copies of CATH domain 2.30.42.10 (Pdz3 Domain) in SH3 and multiple ankyrin repeat domains protein 1. Showing 1 copy in chain A.
SCOP SCOP annotation
50157
Class: All beta proteins
Fold: PDZ domain-like
Superfamily: PDZ domain-like
Occurring in:
  1. SH3 and multiple ankyrin repeat domains protein 1
The deposited structure of PDB entry 1q3o contains 2 copies of SCOP domain 50157 (PDZ domain) in SH3 and multiple ankyrin repeat domains protein 1. Showing 1 copy in chain A.

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