› 1puy

X-ray diffraction
1.5Å resolution

1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker

Released:
DOI: 10.2210/pdb1puy/pdb
PDB entry 1puy coloured by chain, front view.
PDB entry 1puy coloured by chain, side view.
PDB entry 1puy coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Face-to-face and edge-to-face pi-pi interactions in a synthetic DNA hairpin with a stilbenediether linker.
Egli M, Tereshko V, Mushudov GN, Sanishvili R, Liu X, Lewis FD
J Am Chem Soc 125 10842-9 (2003)
PMID: 12952463

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114408 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 13 nucleotides
Theoretical weight: 4.03 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 5 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 29.89Å b: 41.86Å c: 51.1Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.206 0.204 0.239
Expression system: Not provided

Quick links

Citations

5 review citations

Electron transfer processes in DNA: mechanisms, biological relevance and applications in DNA analytics.
Wagenknecht HA. (2006)
4 more

3 mentions without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)
2 more