› 1osw

Solution NMR

The Stem of SL1 RNA in HIV-1: Structure and Nucleocapsid Protein Binding for a 1X3 Internal Loop

Released:
DOI: 10.2210/pdb1osw/pdb
PDB entry 1osw coloured by chain, ensemble of 23 models, front view.
PDB entry 1osw coloured by chain, ensemble of 23 models, side view.
PDB entry 1osw coloured by chain, ensemble of 23 models, top view.
Source organism: Synthetic construct
Primary publication:
Stem of SL1 RNA in HIV-1: structure and nucleocapsid protein binding for a 1 x 3 internal loop.
Yuan Y, Kerwood DJ, Paoletti AC, Shubsda MF, Borer PN
Biochemistry 42 5259-69 (2003)
PMID: 12731867

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196154 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
5'-R(*GP*GP*AP*GP*GP*CP*GP*CP*UP*AP*CP*GP*GP*CP*GP*AP*GP*GP*CP*UP*CP*CP*A)-3' Chain: A
Molecule details ›
Chain: A
Length: 23 nucleotides
Theoretical weight: 7.47 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: DYANA followed by molecular dynamics using AMBER
Expression system: Not provided

Quick links

Citations

4 review citations

Structural determinants and mechanism of HIV-1 genome packaging.
Lu et al. (2011)
3 more

2 mentions without citation

Structural and computational studies of HIV-1 RNA.
Levintov et al. (2024)
1 more