› 1o91

X-ray diffraction
1.9Å resolution

Crystal Structure of a Collagen VIII NC1 Domain Trimer

Released:
DOI: 10.2210/pdb1o91/pdb
PDB entry 1o91 coloured by chain, front view.
PDB entry 1o91 coloured by chain, side view.
PDB entry 1o91 coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
Crystal structure of the collagen alpha1(VIII) NC1 trimer.
Kvansakul M, Bogin O, Hohenester E, Yayon A
Matrix Biol 22 145-52 (2003)
PMID: 12782141

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169471 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Vastatin Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 178 amino acids
Theoretical weight: 19.73 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q00780 (Residues: 573-744; Coverage: 24%)
Gene name: Col8a1
Sequence domains: C1q domain
Structure domains: Jelly Rolls

Ligands and Environments

2 bound ligands:
Ligand CPS 1 x CPS
Ligand SO4 1 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RUH3R
Spacegroup: P212121
Unit cell:
a: 63.59Å b: 82.55Å c: 89.94Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.185 0.185 0.209
Expression system: Escherichia coli

Quick links

Citations

6 review citations

C1q and tumor necrosis factor superfamily: modularity and versatility.
Kishore et al. (2004)
5 more

5 mentions without citation

The collagen family.
Ricard-Blum S. (2011)
4 more