1nov

X-ray diffraction
3.5Å resolution

NODAMURA VIRUS

Released:
Source organism: Nodamura virus
Entry authors: Natarajan P, Johnson JE

Function and Biology Details

Reaction catalysed:
Hydrolysis of an asparaginyl bond involved in the maturation of the structural protein of the virus, typically -Asn-|-Ala- or -Asn-|-Phe-.
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
hetero 360-mer (preferred)
hetero hexamer
hetero 30-mer
hetero 36-mer
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Capsid protein beta Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 355 amino acids
Theoretical weight: 38.51 KDa
Source organism: Nodamura virus
Expression system: Galleria mellonella
UniProt:
  • Canonical: P12871 (Residues: 1-355; Coverage: 89%)
Gene name: alpha
Sequence domains: Peptidase A6 family
Structure domains: Jelly Rolls
Peptide gamma Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 44 amino acids
Theoretical weight: 4.62 KDa
Source organism: Nodamura virus
UniProt:
  • Canonical: P12871 (Residues: 356-399; Coverage: 11%)
Gene name: alpha

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: P21
Unit cell:
a: 562.09Å b: 354.13Å c: 612.77Å
α: 90° β: 110.89° γ: 90°
R-values:
R R work R free
0.296 0.296 not available
Expression system: Galleria mellonella