Structure analysis

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

X-ray diffraction
3.1Å resolution
Source organism: Deinococcus radiodurans
Assembly composition:
hetero 31-mer (preferred)
Entry contents: 29 distinct polypeptide molecules
2 distinct RNA molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 31-mer
Accessible surface area: 404742.86 Å2
Buried surface area: 1685.36 Å2
Dissociation area: 842.68 Å2
Dissociation energy (ΔGdiss): 16.82 kcal/mol
Dissociation entropy (TΔSdiss): 15.53 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-155892

Macromolecules

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Chain: C
Length: 205 amino acids
Theoretical weight: 22.31 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RXK1 (Residues: 1-205; Coverage: 100%)
Gene names: DR_0312, rplD
Pfam: Ribosomal protein L4/L1 family
InterPro:
SCOP: Large subunit

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Chain: L
Length: 116 amino acids
Theoretical weight: 12.93 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RSJ5 (Residues: 1-116; Coverage: 100%)
Gene names: DR_2129, rplQ
Pfam: Ribosomal protein L17
InterPro:
SCOP: Large subunit

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Chain: M
Length: 114 amino acids
Theoretical weight: 12.16 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RSL2 (Residues: 1-114; Coverage: 100%)
Gene names: DR_2112, rplR
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
SCOP: Large subunit

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Chain: N
Length: 166 amino acids
Theoretical weight: 18.35 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RWB4 (Residues: 1-166; Coverage: 100%)
Gene names: DR_0755, rplS
Pfam: Ribosomal protein L19
InterPro:
SCOP: Large subunit

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Chain: O
Length: 118 amino acids
Theoretical weight: 13.99 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RSW7 (Residues: 1-118; Coverage: 100%)
Gene names: DR_2004, rplT
Pfam: Ribosomal protein L20
InterPro:
SCOP: Large subunit

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Chain: P
Length: 100 amino acids
Theoretical weight: 11.17 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RY64 (Residues: 1-100; Coverage: 100%)
Gene names: DR_0086, rplU
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
SCOP: Large subunit

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Chain: U
Length: 91 amino acids
Theoretical weight: 9.61 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RY65 (Residues: 1-91; Coverage: 100%)
Gene names: DR_0085, rpmA
Pfam: Ribosomal L27 protein
InterPro:
SCOP: Large subunit

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Chain: W
Length: 67 amino acids
Theoretical weight: 7.77 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RXJ4 (Residues: 1-67; Coverage: 100%)
Gene names: DR_0319, rpmC
Pfam: Ribosomal L29 protein
InterPro:
SCOP: Large subunit

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Chain: Z
Length: 60 amino acids
Theoretical weight: 6.81 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: P49228 (Residues: 1-60; Coverage: 100%)
Gene names: DR_2366, rpmF
Pfam: Ribosomal L32p protein family
InterPro:
SCOP: Large subunit

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Chain: 1
Length: 82 amino acids
Theoretical weight: 9.29 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RSS4 (Residues: 1-55; Coverage: 100%)
Gene names: DR_2049, rpmG
Pfam: Ribosomal protein L33
InterPro:
SCOP: Large subunit

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Chain: 2
Length: 47 amino acids
Theoretical weight: 5.63 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RSH2 (Residues: 1-47; Coverage: 100%)
Gene names: DR_2152, rpmH
Pfam: Ribosomal protein L34
InterPro:
SCOP: Large subunit

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Chain: 4
Length: 36 amino acids
Theoretical weight: 4.27 KDa
Source organism: Deinococcus radiodurans
UniProt:
  • Canonical: Q9RSK0 (Residues: 1-36; Coverage: 97%)
Gene names: DR_2124, rpmJ
Pfam: Ribosomal protein L36
InterPro:
SCOP: Large subunit

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Name: 23S ribosomal RNA
Representative chains: 0
Length: 2880 nucleotides
Theoretical weight: 933.41 KDa
Rfam: Bacterial large subunit ribosomal RNA

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Name: 5S ribosomal RNA
Representative chains: 9
Length: 124 nucleotides
Theoretical weight: 39.91 KDa
Rfam: 5S ribosomal RNA

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