Assemblies
Assembly Name:
Large ribosomal protein and RNA
Multimeric state:
hetero 31-mer
Accessible surface area:
404742.86 Å2
Buried surface area:
1685.36 Å2
Dissociation area:
842.68
Å2
Dissociation energy (ΔGdiss):
16.82
kcal/mol
Dissociation entropy (TΔSdiss):
15.53
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-155892
Macromolecules
Chain: A
Length: 275 amino acids
Theoretical weight: 30.11 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
Length: 275 amino acids
Theoretical weight: 30.11 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ9 (Residues: 1-275; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL2, bacterial/organellar-type
- Nucleic acid-binding, OB-fold
- Large ribosomal subunit protein uL2
- Large ribosomal subunit protein uL2, RNA-binding domain
- Large ribosomal subunit protein uL2, domain 2
- Large ribosomal subunit protein uL2, C-terminal
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL2, domain 3
- Large ribosomal subunit protein uL2, conserved site
Chain: B
Length: 211 amino acids
Theoretical weight: 22.48 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L3
InterPro:
Length: 211 amino acids
Theoretical weight: 22.48 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXK2 (Residues: 1-211; Coverage: 100%)
Pfam: Ribosomal protein L3
InterPro:
- Translation protein, beta-barrel domain superfamily
- Large ribosomal subunit protein uL3, bacterial/organelle-type
- Large ribosomal subunit protein uL3
- Large ribosomal subunit protein uL3, conserved site
Chain: C
Length: 205 amino acids
Theoretical weight: 22.31 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L4/L1 family
InterPro:
Length: 205 amino acids
Theoretical weight: 22.31 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXK1 (Residues: 1-205; Coverage: 100%)
Pfam: Ribosomal protein L4/L1 family
InterPro:
- Large ribosomal subunit protein uL4 domain superfamily
- Large ribosomal subunit protein uL4-like
- Large ribosomal subunit protein uL4
Chain: D
Length: 180 amino acids
Theoretical weight: 20.38 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
Length: 180 amino acids
Theoretical weight: 20.38 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ0 (Residues: 1-180; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL5
- Large ribosomal subunit protein uL5, bacterial-type
- Large ribosomal subunit protein uL5 domain superfamily
- Large ribosomal subunit protein uL5, N-terminal
- Large ribosomal subunit protein uL5, C-terminal
Chain: E
Length: 212 amino acids
Theoretical weight: 22.87 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L6
InterPro:
Length: 212 amino acids
Theoretical weight: 22.87 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSL3 (Residues: 1-185; Coverage: 100%)
Pfam: Ribosomal protein L6
InterPro:
- Large ribosomal subunit protein uL6-like
- Large ribosomal subunit protein uL6, bacterial-type
- Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily
- Large ribosomal subunit protein uL6, alpha-beta domain
Chain: F
Length: 146 amino acids
Theoretical weight: 16.09 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
Length: 146 amino acids
Theoretical weight: 16.09 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RY49 (Residues: 1-146; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein bL9
- Large ribosomal subunit protein bL9/RNase H1, N-terminal
- Large ribosomal subunit protein bL9, N-terminal
- Large ribosomal subunit protein bL9, bacteria/chloroplast
- Large ribosomal subunit protein bL9, N-terminal domain superfamily
- Large ribosomal subunit protein bL9, C-terminal domain superfamily
- Large ribosomal subunit protein bL9, C-terminal
Chain: G
Length: 144 amino acids
Theoretical weight: 14.89 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
Length: 144 amino acids
Theoretical weight: 14.89 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSS7 (Residues: 1-144; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL11, N-terminal domain superfamily
- Ribosomal protein uL11
- Large ribosomal subunit protein uL11, bacterial-type
- Large ribosomal subunit protein uL11, N-terminal
- Large ribosomal subunit protein uL11, C-terminal domain superfamily
- Large ribosomal subunit protein uL11, C-terminal
- Large ribosomal subunit protein uL11, conserved site
Chain: H
Length: 174 amino acids
Theoretical weight: 19.22 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L13
InterPro:
Length: 174 amino acids
Theoretical weight: 19.22 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXY1 (Residues: 1-174; Coverage: 100%)
Pfam: Ribosomal protein L13
InterPro:
- Large ribosomal subunit protein uL13
- Large ribosomal subunit protein uL13 superfamily
- Large ribosomal subunit protein uL13, bacterial-type
- Large ribosomal subunit protein uL13, conserved site
Chain: I
Length: 134 amino acids
Theoretical weight: 14.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L14p/L23e
InterPro:
Length: 134 amino acids
Theoretical weight: 14.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ2 (Residues: 1-134; Coverage: 100%)
Pfam: Ribosomal protein L14p/L23e
InterPro:
- Large ribosomal subunit protein uL14
- Large ribosomal subunit protein uL14, bacterial-type
- Large ribosomal subunit protein uL14 superfamily
- Large ribosomal subunit protein uL14, conserved site
Chain: J
Length: 156 amino acids
Theoretical weight: 16.89 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Length: 156 amino acids
Theoretical weight: 16.89 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSK9 (Residues: 1-156; Coverage: 100%)
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
- Large ribosomal subunit protein uL15, bacterial-type
- Large ribosomal subunit protein uL15
- Large ribosomal subunit protein uL15/eL18 superfamily
- Large ribosomal subunit protein uL15/eL18
- Large ribosomal subunit protein uL15, conserved site
Chain: K
Length: 142 amino acids
Theoretical weight: 16.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L16p/L10e
InterPro:
Length: 142 amino acids
Theoretical weight: 16.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ5 (Residues: 1-141; Coverage: 100%)
Pfam: Ribosomal protein L16p/L10e
InterPro:
- Large ribosomal subunit protein uL16, bacterial-type
- Large ribosomal subunit protein uL16 superfamily
- Large ribosomal subunit protein uL16
- Large ribosomal subunit protein uL16 domain
- Large ribosomal subunit protein uL16, conserved site
Chain: L
Length: 116 amino acids
Theoretical weight: 12.93 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L17
InterPro:
Length: 116 amino acids
Theoretical weight: 12.93 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSJ5 (Residues: 1-116; Coverage: 100%)
Pfam: Ribosomal protein L17
InterPro:
- Large ribosomal subunit protein bL17
- Large ribosomal subunit protein bL17 superfamily
- Large ribosomal subunit protein bL17, conserved site
Chain: M
Length: 114 amino acids
Theoretical weight: 12.16 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
SCOP: Large subunit
Length: 114 amino acids
Theoretical weight: 12.16 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSL2 (Residues: 1-114; Coverage: 100%)
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
SCOP: Large subunit
Chain: N
Length: 166 amino acids
Theoretical weight: 18.35 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L19
InterPro:
Length: 166 amino acids
Theoretical weight: 18.35 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RWB4 (Residues: 1-166; Coverage: 100%)
Pfam: Ribosomal protein L19
InterPro:
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein bL19
- Large ribosomal subunit protein bL19 superfamily
- Large ribosomal subunit protein bL19, conserved site
Chain: O
Length: 118 amino acids
Theoretical weight: 13.99 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L20
InterPro:
SCOP: Large subunit
Length: 118 amino acids
Theoretical weight: 13.99 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSW7 (Residues: 1-118; Coverage: 100%)
Pfam: Ribosomal protein L20
InterPro:
SCOP: Large subunit
Chain: P
Length: 100 amino acids
Theoretical weight: 11.17 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
Length: 100 amino acids
Theoretical weight: 11.17 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RY64 (Residues: 1-100; Coverage: 100%)
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
- Large ribosomal subunit protein bL21
- Large ribosomal subunit protein bL21-like
- Large ribosomal subunit protein bL21-like superfamily
Chain: Q
Length: 134 amino acids
Theoretical weight: 15.19 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L22p/L17e
InterPro:
Length: 134 amino acids
Theoretical weight: 15.19 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ7 (Residues: 1-134; Coverage: 100%)
Pfam: Ribosomal protein L22p/L17e
InterPro:
- Ribosomal protein uL22 superfamily
- Large ribosomal subunit protein uL22, bacterial/organelle-type
- Large ribosomal subunit protein uL22, bacterial/chloroplast-type
- Large ribosomal subunit protein uL22
- Large ribosomal subunit protein uL22, conserved site
Chain: R
Length: 95 amino acids
Theoretical weight: 10.54 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L23
InterPro:
Length: 95 amino acids
Theoretical weight: 10.54 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXK0 (Residues: 1-95; Coverage: 100%)
Pfam: Ribosomal protein L23
InterPro:
- Ribosomal protein uL23/eL15/eS24 core domain superfamily
- Large ribosomal subunit protein uL23-like
- Nucleotide-binding alpha-beta plait domain superfamily
- Large ribosomal subunit protein uL23, conserved site
Chain: S
Length: 115 amino acids
Theoretical weight: 12.38 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
Length: 115 amino acids
Theoretical weight: 12.38 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ1 (Residues: 1-115; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL2, domain 2
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL24
- KOW
- Large ribosomal subunit protein uL24, conserved site
- Large ribosomal subunit protein uL24, KOW domain
Chain: T
Length: 253 amino acids
Theoretical weight: 27 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
Length: 253 amino acids
Theoretical weight: 27 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RX88 (Residues: 1-237; Coverage: 100%)
Pfam:
InterPro:
- Ribosomal protein bL25, long-form
- Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal
- Large ribosomal subunit protein bL25, L25 domain
- Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily
- Large ribosomal subunit protein bL25, C-terminal
- Large ribosomal subunit protein bL25, beta domain
Chain: U
Length: 91 amino acids
Theoretical weight: 9.61 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L27 protein
InterPro:
SCOP: Large subunit
Length: 91 amino acids
Theoretical weight: 9.61 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RY65 (Residues: 1-91; Coverage: 100%)
Pfam: Ribosomal L27 protein
InterPro:
SCOP: Large subunit
Chain: W
Length: 67 amino acids
Theoretical weight: 7.77 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L29 protein
InterPro:
Length: 67 amino acids
Theoretical weight: 7.77 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ4 (Residues: 1-67; Coverage: 100%)
Pfam: Ribosomal L29 protein
InterPro:
- Large ribosomal subunit protein uL29
- Large ribosomal subunit protein uL29 superfamily
- Large ribosomal subunit protein uL29, conserved site
Chain: X
Length: 55 amino acids
Theoretical weight: 6.08 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L30p/L7e
InterPro:
Length: 55 amino acids
Theoretical weight: 6.08 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSL0 (Residues: 1-55; Coverage: 100%)
Pfam: Ribosomal protein L30p/L7e
InterPro:
- Large ribosomal subunit protein uL30, bacterial-type
- Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
- Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
Chain: Y
Length: 73 amino acids
Theoretical weight: 8.6 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L31
InterPro:
Length: 73 amino acids
Theoretical weight: 8.6 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RW44 (Residues: 1-73; Coverage: 100%)
Pfam: Ribosomal protein L31
InterPro:
- Large ribosomal subunit protein bL31 type A/B
- Large ribosomal subunit protein bL31 type A
- Large ribosomal subunit protein bL28/bL31-like superfamily
- Large ribosomal subunit protein bL31 superfamily
Chain: Z
Length: 60 amino acids
Theoretical weight: 6.81 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L32p protein family
InterPro:
Length: 60 amino acids
Theoretical weight: 6.81 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: P49228 (Residues: 1-60; Coverage: 100%)
Pfam: Ribosomal L32p protein family
InterPro:
- Zinc-binding ribosomal protein
- Large ribosomal subunit protein bL32
- Large ribosomal subunit protein bL32, bacterial type
Chain: 1
Length: 82 amino acids
Theoretical weight: 9.29 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L33
InterPro:
Length: 82 amino acids
Theoretical weight: 9.29 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSS4 (Residues: 1-55; Coverage: 100%)
Pfam: Ribosomal protein L33
InterPro:
- Large ribosomal subunit protein bL33
- Large ribosomal subunit protein bL33 superfamily
- Zinc-binding ribosomal protein
- Large ribosomal subunit protein bL33, conserved site
Chain: 2
Length: 47 amino acids
Theoretical weight: 5.63 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L34
InterPro:
SCOP: Large subunit
Length: 47 amino acids
Theoretical weight: 5.63 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSH2 (Residues: 1-47; Coverage: 100%)
Pfam: Ribosomal protein L34
InterPro:
SCOP: Large subunit
Chain: 3
Length: 64 amino acids
Theoretical weight: 7.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L35
InterPro:
Length: 64 amino acids
Theoretical weight: 7.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSW6 (Residues: 1-64; Coverage: 97%)
Pfam: Ribosomal protein L35
InterPro:
- Large ribosomal subunit protein bL35
- Large ribosomal subunit protein bL35-like
- Large ribosomal subunit protein bL35 superfamily
- Large ribosomal subunit protein bL35, conserved site
Chain: 4
Length: 36 amino acids
Theoretical weight: 4.27 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L36
InterPro:
SCOP: Large subunit
Length: 36 amino acids
Theoretical weight: 4.27 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSK0 (Residues: 1-36; Coverage: 97%)
Pfam: Ribosomal protein L36
InterPro:
SCOP: Large subunit
Name:
23S ribosomal RNA
Representative chains: 0
Length: 2880 nucleotides
Theoretical weight: 933.41 KDa
Rfam: Bacterial large subunit ribosomal RNA
Representative chains: 0
Length: 2880 nucleotides
Theoretical weight: 933.41 KDa
Rfam: Bacterial large subunit ribosomal RNA
Name:
5S ribosomal RNA
Representative chains: 9
Length: 124 nucleotides
Theoretical weight: 39.91 KDa
Rfam: 5S ribosomal RNA
Representative chains: 9
Length: 124 nucleotides
Theoretical weight: 39.91 KDa
Rfam: 5S ribosomal RNA