1ncr

X-ray diffraction
2.7Å resolution

The structure of Rhinovirus 16 when complexed with pleconaril, an antiviral compound

Released:

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
Selective cleavage of Tyr-|-Gly bond in picornavirus polyprotein.
NTP + H(2)O = NDP + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero 240-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182637 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
Capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 285 amino acids
Theoretical weight: 32.5 KDa
Source organism: rhinovirus A16
UniProt:
  • Canonical: Q82122 (Residues: 569-853; Coverage: 13%)
Sequence domains: picornavirus capsid protein
Structure domains: Jelly Rolls
Capsid protein VP2 Chain: B
Molecule details ›
Chain: B
Length: 261 amino acids
Theoretical weight: 28.99 KDa
Source organism: rhinovirus A16
UniProt:
  • Canonical: Q82122 (Residues: 70-330; Coverage: 12%)
Sequence domains: picornavirus capsid protein
Structure domains: Jelly Rolls
Capsid protein VP3 Chain: C
Molecule details ›
Chain: C
Length: 238 amino acids
Theoretical weight: 26.31 KDa
Source organism: rhinovirus A16
UniProt:
  • Canonical: Q82122 (Residues: 331-568; Coverage: 11%)
Sequence domains: picornavirus capsid protein
Structure domains: Jelly Rolls
Capsid protein VP4 Chain: D
Molecule details ›
Chain: D
Length: 68 amino acids
Theoretical weight: 7.37 KDa
Source organism: rhinovirus A16
UniProt:
  • Canonical: Q82122 (Residues: 2-69; Coverage: 3%)
Sequence domains: Picornavirus coat protein (VP4)

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Unit cell:
a: 359.494Å b: 343.657Å c: 332.184Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.247 0.243 0.247