1leo

X-ray diffraction
2.6Å resolution

P100S NUCLEOSIDE DIPHOSPHATE KINASE

Released:

Function and Biology Details

Reaction catalysed:
ATP + nucleoside diphosphate = ADP + nucleoside triphosphate
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside diphosphate kinase, cytosolic Chain: A
Molecule details ›
Chain: A
Length: 150 amino acids
Theoretical weight: 16.24 KDa
Source organism: Dictyostelium discoideum
Expression system: Escherichia coli
UniProt:
  • Canonical: P22887 (Residues: 6-155; Coverage: 97%)
Gene names: DDB_G0273069, DDB_G0273805, gip17, ndkB, ndkC-1, ndkC-2
Sequence domains: Nucleoside diphosphate kinase
Structure domains: Nucleoside diphosphate kinase-like domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: LURE
Spacegroup: P6322
Unit cell:
a: 75.044Å b: 75.044Å c: 105.2Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.193 0.193 not available
Expression system: Escherichia coli