Assemblies
Assembly Name:
Large ribosomal protein and RNA
Multimeric state:
hetero 32-mer
Accessible surface area:
439292.55 Å2
Buried surface area:
209756.92 Å2
Dissociation area:
463.09
Å2
Dissociation energy (ΔGdiss):
0.81
kcal/mol
Dissociation entropy (TΔSdiss):
9.66
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-145598
Macromolecules
Chain: A
Length: 239 amino acids
Theoretical weight: 25.24 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam:
InterPro:
SCOP:
Length: 239 amino acids
Theoretical weight: 25.24 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P20276 (Residues: 2-240; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL2
- Nucleic acid-binding, OB-fold
- Large ribosomal subunit protein uL2, archaeal-type
- Large ribosomal subunit protein uL2, RNA-binding domain
- Large ribosomal subunit protein uL2, domain 2
- Large ribosomal subunit protein uL2, C-terminal
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL2, domain 3
- Large ribosomal subunit protein uL2, conserved site
SCOP:
Chain: B
Length: 337 amino acids
Theoretical weight: 37.27 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L3
InterPro:
SCOP: Ribosomal protein L3
Length: 337 amino acids
Theoretical weight: 37.27 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P20279 (Residues: 2-338; Coverage: 100%)
Pfam: Ribosomal protein L3
InterPro:
- Large ribosomal subunit protein uL3, archaeal
- Translation protein, beta-barrel domain superfamily
- Large ribosomal subunit protein uL3
- Ribosomal protein L3, domain 3, archaeal-type superfamily
- Large ribosomal subunit protein uL3, archaeal/eukaryotic-type
- Large ribosomal subunit protein uL3, conserved site
SCOP: Ribosomal protein L3
Chain: C
Length: 246 amino acids
Theoretical weight: 26.44 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L4/L1 family
InterPro:
SCOP: Ribosomal protein L4
Length: 246 amino acids
Theoretical weight: 26.44 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P12735 (Residues: 1-246; Coverage: 100%)
Pfam: Ribosomal protein L4/L1 family
InterPro:
- Large ribosomal subunit protein uL4, archaea
- Large ribosomal subunit protein uL4 domain superfamily
- Large ribosomal subunit protein uL4, eukaryotic and archaeal type
- Large ribosomal subunit protein uL4
- Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved site
SCOP: Ribosomal protein L4
Chain: D
Length: 176 amino acids
Theoretical weight: 19.42 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam:
InterPro:
SCOP: Ribosomal protein L5
Length: 176 amino acids
Theoretical weight: 19.42 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P14124 (Residues: 2-177; Coverage: 99%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL5
- Large ribosomal subunit protein uL5 domain superfamily
- Large ribosomal subunit protein uL5, archaeal
- Large ribosomal subunit protein uL5, N-terminal
- Large ribosomal subunit protein uL5, conserved site
- Large ribosomal subunit protein uL5, C-terminal
SCOP: Ribosomal protein L5
Chain: E
Length: 177 amino acids
Theoretical weight: 19.83 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L6
InterPro:
SCOP: Ribosomal protein L6
Length: 177 amino acids
Theoretical weight: 19.83 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P14135 (Residues: 2-178; Coverage: 99%)
Pfam: Ribosomal protein L6
InterPro:
- Large ribosomal subunit protein uL6, archaea
- Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily
- Large ribosomal subunit protein uL6-like
- Large ribosomal subunit protein uL6, alpha-beta domain
- Large ribosomal subunit protein uL6, conserved site-2
SCOP: Ribosomal protein L6
Chain: F
Length: 119 amino acids
Theoretical weight: 12.6 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
SCOP: L30e/L7ae ribosomal proteins
Length: 119 amino acids
Theoretical weight: 12.6 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P12743 (Residues: 2-120; Coverage: 99%)
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
- Large ribosomal subunit protein eL8, archaea
- Ribosomal protein eL30-like superfamily
- Ribosomal protein eL8/eL30/eS12/Gadd45
- Ribosomal protein eL8/Nhp2 family
- Large ribosomal subunit protein eL8-like, conserved site
SCOP: L30e/L7ae ribosomal proteins
Chain: G
Length: 348 amino acids
Theoretical weight: 37.21 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam:
InterPro:
Length: 348 amino acids
Theoretical weight: 37.21 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P15825 (Residues: 1-348; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL10, archaea
- Large ribosomal subunit protein uL10-like domain superfamily
- Large ribosomal subunit protein uL10
- Large ribosomal subunit protein uL10-like, insertion domain superfamily
- Large ribosomal subunit protein uL10-like, insertion domain
Chain: H
Length: 167 amino acids
Theoretical weight: 18.02 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L16p/L10e
InterPro:
SCOP: Ribosomal protein L10e
Length: 167 amino acids
Theoretical weight: 18.02 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P60617 (Residues: 4-166; Coverage: 90%)
Pfam: Ribosomal protein L16p/L10e
InterPro:
- Large ribosomal subunit protein uL16, eukaryotes/archaea
- Large ribosomal subunit protein uL16 superfamily
- Large ribosomal subunit protein uL16
- Large ribosomal subunit protein uL16 domain
SCOP: Ribosomal protein L10e
Chain: I
Length: 145 amino acids
Theoretical weight: 16.25 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L13
InterPro:
SCOP: Ribosomal protein L13
Length: 145 amino acids
Theoretical weight: 16.25 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P29198 (Residues: 1-145; Coverage: 100%)
Pfam: Ribosomal protein L13
InterPro:
- Large ribosomal subunit protein uL13 superfamily
- Large ribosomal subunit protein uL13
- Large ribosomal subunit protein uL13, eukaryotic/archaeal
- Large ribosomal subunit protein uL13, conserved site
SCOP: Ribosomal protein L13
Chain: J
Length: 132 amino acids
Theoretical weight: 14.22 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L14p/L23e
InterPro:
SCOP: Ribosomal protein L14
Length: 132 amino acids
Theoretical weight: 14.22 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P22450 (Residues: 1-132; Coverage: 100%)
Pfam: Ribosomal protein L14p/L23e
InterPro:
- Large ribosomal subunit protein uL14 superfamily
- Large ribosomal subunit protein uL14, archaeal
- Large ribosomal subunit protein uL14
- Large ribosomal subunit protein uL14, conserved site
SCOP: Ribosomal protein L14
Chain: K
Length: 164 amino acids
Theoretical weight: 17.87 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
SCOP: Ribosomal proteins L15p and L18e
Length: 164 amino acids
Theoretical weight: 17.87 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P12737 (Residues: 2-165; Coverage: 99%)
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
- Ribosomal uL15, N-terminal
- Large ribosomal subunit protein uL15
- Large ribosomal subunit protein uL15/eL18 superfamily
- Large ribosomal subunit protein uL15/eL18
- Large ribosomal subunit protein uL15, conserved site
SCOP: Ribosomal proteins L15p and L18e
Chain: L
Length: 194 amino acids
Theoretical weight: 22.86 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal L15
InterPro:
SCOP: L15e
Length: 194 amino acids
Theoretical weight: 22.86 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P60618 (Residues: 2-194; Coverage: 99%)
Pfam: Ribosomal L15
InterPro:
- Large ribosomal subunit protein eL15 core domain superfamily
- Ribosomal protein uL23/eL15/eS24 core domain superfamily
- Large ribosomal subunit protein eL15, archaeal
- Large ribosomal subunit protein eL15
- Large ribosomal subunit protein eL15, conserved site
SCOP: L15e
Chain: M
Length: 186 amino acids
Theoretical weight: 20.51 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18
InterPro: Large ribosomal subunit protein uL18 eukaryotic/archaeal
CATH: Nucleotidyltransferase; domain 5
SCOP: Ribosomal protein L18 and S11
Length: 186 amino acids
Theoretical weight: 20.51 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P14123 (Residues: 2-187; Coverage: 100%)
Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18
InterPro: Large ribosomal subunit protein uL18 eukaryotic/archaeal
CATH: Nucleotidyltransferase; domain 5
SCOP: Ribosomal protein L18 and S11
Chain: N
Length: 115 amino acids
Theoretical weight: 12.31 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
SCOP: Ribosomal proteins L15p and L18e
Length: 115 amino acids
Theoretical weight: 12.31 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P12733 (Residues: 2-116; Coverage: 99%)
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
- Large ribosomal subunit protein uL15/eL18 superfamily
- Large ribosomal subunit protein uL15/eL18
- Large ribosomal subunit protein uL15, conserved site
- Large ribosomal subunit protein eL18, archaea
- Large ribosomal subunit protein eL18
- Large ribosomal subunit protein eL18, conserved site
SCOP: Ribosomal proteins L15p and L18e
Chain: O
Length: 148 amino acids
Theoretical weight: 16.63 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L19e
InterPro:
Length: 148 amino acids
Theoretical weight: 16.63 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P14119 (Residues: 2-149; Coverage: 99%)
Pfam: Ribosomal protein L19e
InterPro:
- Large ribosomal subunit protein eL19, domain 1
- Large ribosomal subunit protein eL19 domain
- Large ribosomal subunit protein eL19 superfamily
- Large ribosomal subunit protein eL19
- Large ribosomal subunit protein eL19, archaeal
- Large ribosomal subunit protein eL19, conserved site
- Large ribosomal subunit protein eL19, domain 2
- Large ribosomal subunit protein eL19, domain 3
- 50s Ribosomal Protein L19e, Chain O, domain 1
- Single Heli x bin
- Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Chain: P
Length: 95 amino acids
Theoretical weight: 10.44 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L21e
InterPro:
SCOP: Ribosomal proteins L24p and L21e
Length: 95 amino acids
Theoretical weight: 10.44 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P12734 (Residues: 2-96; Coverage: 99%)
Pfam: Ribosomal protein L21e
InterPro:
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein eL21, archaeal
- Large ribosomal subunit protein eL21 superfamily
- Large ribosomal subunit protein eL21
- Large ribosomal subunit protein eL21, conserved site
SCOP: Ribosomal proteins L24p and L21e
Chain: Q
Length: 154 amino acids
Theoretical weight: 16.84 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L22p/L17e
InterPro:
SCOP: Ribosomal protein L22
Length: 154 amino acids
Theoretical weight: 16.84 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P10970 (Residues: 2-155; Coverage: 99%)
Pfam: Ribosomal protein L22p/L17e
InterPro:
- Ribosomal protein uL22 superfamily
- Large ribosomal subunit protein uL22, eukaryotic/archaeal
- Large ribosomal subunit protein uL22
- Large ribosomal subunit protein uL22, conserved site
SCOP: Ribosomal protein L22
Chain: R
Length: 84 amino acids
Theoretical weight: 9.48 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L23
InterPro:
SCOP: L23p
Length: 84 amino acids
Theoretical weight: 9.48 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P12732 (Residues: 2-85; Coverage: 99%)
Pfam: Ribosomal protein L23
InterPro:
- Ribosomal protein uL23/eL15/eS24 core domain superfamily
- Nucleotide-binding alpha-beta plait domain superfamily
- Large ribosomal subunit protein uL23-like
- Large ribosomal subunit protein uL23
- Large ribosomal subunit protein uL23, conserved site
SCOP: L23p
Chain: S
Length: 119 amino acids
Theoretical weight: 13.54 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam:
InterPro:
SCOP: Ribosomal proteins L24p and L21e
Length: 119 amino acids
Theoretical weight: 13.54 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P10972 (Residues: 2-120; Coverage: 99%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL2, domain 2
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL24, eukaryotic/archaeal
- KOW
- Large ribosomal subunit protein uL24, conserved site
- Large ribosomal subunit protein uL24, KOW domain
SCOP: Ribosomal proteins L24p and L21e
Chain: T
Length: 66 amino acids
Theoretical weight: 7.23 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L24e
InterPro:
SCOP: Ribosomal protein L24e
Length: 66 amino acids
Theoretical weight: 7.23 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P14116 (Residues: 2-67; Coverage: 99%)
Pfam: Ribosomal protein L24e
InterPro:
- Large ribosomal subunit protein eL24-related
- Large ribosomal subunit protein eL24
- Ribosomal protein L24e/L24 superfamily
- TRASH domain
- Large ribosomal subunit protein eL24, conserved site
SCOP: Ribosomal protein L24e
Chain: U
Length: 70 amino acids
Theoretical weight: 7.76 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal L29 protein
InterPro:
SCOP: Ribosomal protein L29 (L29p)
Length: 70 amino acids
Theoretical weight: 7.76 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P10971 (Residues: 2-71; Coverage: 99%)
Pfam: Ribosomal L29 protein
InterPro:
- Large ribosomal subunit protein uL29 superfamily
- Large ribosomal subunit protein uL29
- Large ribosomal subunit protein uL29, conserved site
SCOP: Ribosomal protein L29 (L29p)
Chain: V
Length: 154 amino acids
Theoretical weight: 17.06 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L30p/L7e
InterPro:
Length: 154 amino acids
Theoretical weight: 17.06 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P14121 (Residues: 1-154; Coverage: 100%)
Pfam: Ribosomal protein L30p/L7e
InterPro:
- Large ribosomal subunit protein uL30, archaeal
- Large ribosomal subunit protein uL30, eukaryotic/archaeal
- Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
- Large ribosomal subunit protein uL30
- Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
- Large ribosomal subunit protein uL30, conserved site
- Ribosomal protein L30, ferredoxin-like fold domain
- 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Chain: W
Length: 91 amino acids
Theoretical weight: 10.25 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L31e
InterPro:
SCOP: Ribosomal protein L31e
Length: 91 amino acids
Theoretical weight: 10.25 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P18138 (Residues: 2-92; Coverage: 99%)
Pfam: Ribosomal protein L31e
InterPro:
- Large ribosomal subunit protein eL31 domain superfamily
- Large ribosomal subunit protein eL31
- Large ribosomal subunit protein eL31, conserved site
SCOP: Ribosomal protein L31e
Chain: X
Length: 240 amino acids
Theoretical weight: 26.32 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam:
InterPro:
Length: 240 amino acids
Theoretical weight: 26.32 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P12736 (Residues: 2-241; Coverage: 100%)
Pfam:
InterPro:
- DNA repair Rad51/transcription factor NusA, alpha-helical
- Helix-hairpin-helix DNA-binding motif, class 1
- Large ribosomal subunit protein eL32 superfamily
- Large ribosomal subunit protein eL32, archaeal
- Large ribosomal subunit protein eL32
- Large ribosomal subunit protein eL32, conserved site
Chain: Y
Length: 73 amino acids
Theoretical weight: 8.1 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal L37ae protein family
InterPro:
SCOP: Ribosomal protein L37ae
Length: 73 amino acids
Theoretical weight: 8.1 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P60619 (Residues: 11-82; Coverage: 78%)
Pfam: Ribosomal L37ae protein family
InterPro:
- Zinc-binding ribosomal protein
- Large ribosomal subunit protein eL43
- Large ribosomal subunit protein eL37/eL43
SCOP: Ribosomal protein L37ae
Chain: Z
Length: 56 amino acids
Theoretical weight: 6.2 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L37e
InterPro:
SCOP: Ribosomal protein L37e
Length: 56 amino acids
Theoretical weight: 6.2 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P32410 (Residues: 2-57; Coverage: 98%)
Pfam: Ribosomal protein L37e
InterPro:
- Zinc-binding ribosomal protein
- Large ribosomal subunit protein eL37/eL43
- Large ribosomal subunit protein eL37
- Large ribosomal subunit protein eL37, conserved site
SCOP: Ribosomal protein L37e
Chain: 1
Length: 48 amino acids
Theoretical weight: 5.84 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal L39 protein
InterPro:
CATH: Ribosomal protein L39e
SCOP: Ribosomal protein L39e
Length: 48 amino acids
Theoretical weight: 5.84 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P22452 (Residues: 2-50; Coverage: 96%)
Pfam: Ribosomal L39 protein
InterPro:
CATH: Ribosomal protein L39e
SCOP: Ribosomal protein L39e
Chain: 2
Length: 92 amino acids
Theoretical weight: 10.82 KDa
Source organism: Haloarcula marismortui
UniProt:
Pfam: Ribosomal protein L44
InterPro:
CATH: Nuclear Transport Factor 2; Chain: A,
SCOP: Ribosomal protein L44e
Length: 92 amino acids
Theoretical weight: 10.82 KDa
Source organism: Haloarcula marismortui
UniProt:
- Canonical: P32411 (Residues: 1-92; Coverage: 100%)
Pfam: Ribosomal protein L44
InterPro:
CATH: Nuclear Transport Factor 2; Chain: A,
SCOP: Ribosomal protein L44e
Name:
23S ribosomal RNA
Representative chains: 0
Length: 2922 nucleotides
Theoretical weight: 946.03 KDa
Rfam: Archaeal large subunit ribosomal RNA
Representative chains: 0
Length: 2922 nucleotides
Theoretical weight: 946.03 KDa
Rfam: Archaeal large subunit ribosomal RNA
Name:
5S ribosomal RNA
Representative chains: 9
Length: 122 nucleotides
Theoretical weight: 39.32 KDa
Rfam: 5S ribosomal RNA
Representative chains: 9
Length: 122 nucleotides
Theoretical weight: 39.32 KDa
Rfam: 5S ribosomal RNA