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CRYSTAL STRUCTURE OF A FUNCTIONAL UNIT OF INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN (IRBP)

Source organism: Xenopus laevis
Biochemical function: serine-type peptidase activity
Biological process: proteolysis
Cellular component: not assigned

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GO terms

Biochemical function:
Biological process:
Cellular component:
  • not assigned

Sequence families

Pfam Protein families (Pfam)
PF03572
Domain description: Peptidase family S41
Occurring in:
  1. Retinol-binding protein 3
The deposited structure of PDB entry 1j7x contains 1 copy of Pfam domain PF03572 (Peptidase family S41) in Retinol-binding protein 3. Showing 1 copy in chain A.

PF11918
Domain description: N-terminal domain of Peptidase_S41 in eukaryotic IRBP
Occurring in:
  1. Retinol-binding protein 3
The deposited structure of PDB entry 1j7x contains 1 copy of Pfam domain PF11918 (N-terminal domain of Peptidase_S41 in eukaryotic IRBP) in Retinol-binding protein 3. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR005151
Domain description: Tail specific protease
Occurring in:
  1. Retinol-binding protein 3
IPR029045
Domain description: ClpP/crotonase-like domain superfamily
Occurring in:
  1. Retinol-binding protein 3

Structure domains

CATH CATH domains
3.90.226.10
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: 2-enoyl-CoA Hydratase; Chain A, domain 1
Homology: 2-enoyl-CoA Hydratase; Chain A, domain 1
Occurring in:
  1. Retinol-binding protein 3
The deposited structure of PDB entry 1j7x contains 1 copy of CATH domain 3.90.226.10 (2-enoyl-CoA Hydratase; Chain A, domain 1) in Retinol-binding protein 3. Showing 1 copy in chain A.
3.30.750.44
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Transcription Regulator spoIIAA
Homology: Transcription Regulator spoIIAA
Occurring in:
  1. Retinol-binding protein 3
The deposited structure of PDB entry 1j7x contains 1 copy of CATH domain 3.30.750.44 (Transcription Regulator spoIIAA) in Retinol-binding protein 3. Showing 1 copy in chain A.
SCOP SCOP annotation
52100
Class: Alpha and beta proteins (a/b)
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Occurring in:
  1. Retinol-binding protein 3
The deposited structure of PDB entry 1j7x contains 1 copy of SCOP domain 52100 (Tail specific protease, catalytic domain) in Retinol-binding protein 3. Showing 1 copy in chain A.

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