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The first solution structure of a paramagnetic copper(II) protein: the case of oxidized plastocyanin from the cyanobacterium Synechocystis PCC6803.

Bertini I, Ciurli S, Dikiy A, Fernàndez CO, Luchinat C, Safarov N, Shumilin S, Vila AJ
J Am Chem Soc 123 2405-13 (2001)
Cited: 28 times
EuropePMC logo PMID: 11456890

Abstract

The NMR solution structure of oxidized plastocyanin from the cyanobacterium Synechocystis PCC6803 is here reported. The protein contains paramagnetic copper(II), whose electronic relaxation times are quite unfavorable for NMR solution studies. The structure has been solved on the basis of 1041 meaningful NOESY cross-peaks, 18 1D NOEs, 26 T(1) values, 96 dihedral angle constraints, and 18 H-bonds. The detection of broad hyperfine-shifted signals and their full assignment allowed the identification of the copper(II) ligands and the determination of the Cu-S-C-H dihedral angle for the coordinated cysteine. The global root-mean-square deviation from the mean structure for the solution structure family is 0.72 +/- 0.14 and 1.16 +/- 0.17 A for backbone and heavy atoms, respectively. The structure is overall quite satisfactory and represents a breakthrough, in that it includes paramagnetic copper proteins among the metalloproteins for which solution structures can be afforded. The comparison with the available X-ray structure of a triple mutant is also performed.

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  5. Studying Peptide-Metal Ion Complex Structures by Solution-State NMR. Shalev DE. Int J Mol Sci 23 15957 (2022)

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  7. Towards a protocol for solution structure determination of copper(II) proteins: the case of Cu(II)Zn(II) superoxide dismutase. Bertini I, Felli IC, Luchinat C, Parigi G, Pierattelli R. Chembiochem 8 1422-1429 (2007)
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  9. Active site comparison of CoII blue and green nitrite reductases. Sato K, Dennison C. Chemistry 12 6647-6659 (2006)
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  15. Study of electrostatic potential surface distribution of wild-type plastocyanin Synechocystis solution structure determined by homonuclear NMR. Monleón D, Celda B. Biopolymers 70 212-220 (2003)
  16. Tailored HCCH-TOCSY experiment for resonance assignment in the proximity of a paramagnetic center. Piccioli M, Poggi L. J Magn Reson 155 236-243 (2002)
  17. Cu(II)-Based Paramagnetic Probe to Study RNA-Protein Interactions by NMR. Seebald LM, DeMott CM, Ranganathan S, Asare Okai PN, Glazunova A, Chen A, Shekhtman A, Royzen M. Inorg Chem 56 3773-3780 (2017)
  18. Long lived intermediate metal site structure upon binding of cadmium to plastocyanin. Sas KN, Hemmingsen L, Danielsen E. FEBS Lett 580 6861-6864 (2006)
  19. Proximity Labeling Facilitates Defining the Proteome Neighborhood of Photosystem II Oxygen Evolution Complex in a Model Cyanobacterium. Xiao Z, Huang C, Ge H, Wang Y, Duan X, Wang G, Zheng L, Dong J, Huang X, Zhang Y, An H, Xu W, Wang Y. Mol Cell Proteomics 21 100440 (2022)


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