Protein Data Bank in Europe

Chain: A
Length: 1733 amino acids
Theoretical weight: 191.82 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P04050 (Residues: 1-1733; Coverage: 100%)

Gene names: D2150, RPB1, RPB220, RPO21, SUA8, YDL140C
Pfam:

• RNA polymerase Rpb1, domain 1
• RNA polymerase Rpb1, domain 2
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5
• RNA polymerase Rpb1, domain 6
• RNA polymerase Rpb1, domain 7
• RNA polymerase Rpb1 C-terminal repeat

InterPro:

• RNA polymerase Rpb1, clamp domain superfamily
• RNA polymerase Rpb1, domain 1
• DNA-directed RNA polymerase, subunit beta-prime
• RNA polymerase, N-terminal
• RNA polymerase, alpha subunit
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, domain 3 superfamily
• RNA polymerase Rpb1, funnel domain superfamily
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5
• RNA polymerase Rpb1, domain 6
• RNA polymerase Rpb1, domain 7
• RNA polymerase Rpb1, domain 7 superfamily
• RNA polymerase II, heptapeptide repeat, eukaryotic

CATH:

• Barwin-like endoglucanases
• RNA polymerase ii
• RNA polymerase Rpb1, domain 3
• Topoisomerase I; Chain A, domain 4
• Gyrase A; domain 2

SCOP: RNA-polymerase beta-prime

Chain: B
Length: 1224 amino acids
Theoretical weight: 138.94 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P08518 (Residues: 1-1224; Coverage: 100%)

Gene names: RPB150, RPB2, RPO22, YOR151C
Pfam:

• RNA polymerase beta subunit
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 3
• RNA polymerase Rpb2, domain 4
• RNA polymerase Rpb2, domain 5
• RNA polymerase Rpb2, domain 6
• RNA polymerase Rpb2, domain 7

InterPro:

• DNA-directed RNA polymerase, subunit 2
• RNA polymerase, beta subunit, protrusion
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 2 superfamily
• RNA polymerase Rpb2, domain 3
• RNA polymerase Rpb2, domain 4
• RNA polymerase Rpb2, domain 5
• DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
• DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
• RNA polymerase Rpb2, OB-fold
• RNA polymerase, beta subunit, conserved site
• RNA polymerase Rpb2, domain 7

CATH:

• RNA polymerase Rpb2, domain 2
• Hypothetical Protein Ta0175; Chain: A, domain 2
• DNA-directed RNA polymerase, subunit 2, domain 6
• OB fold (Dihydrolipoamide Acetyltransferase, E2P)
• RNA polymerase alpha subunit dimerisation domain

SCOP: RNA-polymerase beta

Chain: C
Length: 318 amino acids
Theoretical weight: 35.33 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P16370 (Residues: 1-318; Coverage: 100%)

Gene names: RPB3, YIL021W
Pfam:

• RNA polymerase Rpb3/Rpb11 dimerisation domain
• RNA polymerase Rpb3/RpoA insert domain

InterPro:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1
• DNA-directed RNA polymerase, RpoA/D/Rpb3-type
• DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
• DNA-directed RNA polymerase, insert domain superfamily
• DNA-directed RNA polymerase, insert domain

CATH:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerase, insert domain

SCOP:

• RNA polymerase alpha subunit dimerisation domain
• Insert subdomain of RNA polymerase alpha subunit

Chain: E
Length: 215 amino acids
Theoretical weight: 25.12 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P20434 (Residues: 1-215; Coverage: 100%)

Gene names: RPA7, RPB5, RPC9, YBR1204, YBR154C
Pfam:

• RNA polymerase Rpb5, N-terminal domain
• RNA polymerase Rpb5, C-terminal domain

InterPro:

• DNA-directed RNA polymerase subunit Rpo5/Rpb5
• RNA polymerase Rpb5, N-terminal domain superfamily
• RNA polymerase, Rpb5, N-terminal
• RPB5-like RNA polymerase subunit superfamily
• RNA polymerase, subunit H/Rpb5 C-terminal
• RNA polymerase, subunit H/Rpb5, conserved site

CATH:

• RNA polymerase, Rpb5, N-terminal domain
• RPB5-like RNA polymerase subunit

SCOP:

• Eukaryotic RPB5 N-terminal domain
• RPB5

Chain: F
Length: 155 amino acids
Theoretical weight: 17.93 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P20435 (Residues: 1-155; Coverage: 100%)

Gene names: P9677.8, RPB6, RPO26, YPR187W
Pfam: RNA polymerase Rpb6
InterPro:

• Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit
• DNA-directed RNA polymerase, subunit RPB6
• RPB6/omega subunit-like superfamily
• RNA polymerase, subunit omega/Rpo6/RPB6
• DNA-directed RNA polymerase, 14-18kDa subunit, conserved site

CATH: Eukaryotic RPB6 RNA polymerase subunit
SCOP: RPB6

Chain: H
Length: 146 amino acids
Theoretical weight: 16.53 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P20436 (Residues: 1-146; Coverage: 100%)

Gene names: RPB8, YOR224C, YOR50-14
Pfam: RNA polymerase Rpb8
InterPro:

• DNA-directed RNA polymerases I, II, and III subunit RPABC3
• Nucleic acid-binding, OB-fold

CATH: Nucleic acid-binding proteins
SCOP: RNA polymerase subunit RBP8

Chain: I
Length: 122 amino acids
Theoretical weight: 14.31 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P27999 (Residues: 1-122; Coverage: 100%)

Gene names: RPB9, YGL070C
Pfam:

• RNA polymerases M/15 Kd subunit
• Transcription factor S-II (TFIIS)

InterPro:

• DNA-directed RNA polymerase subunit/transcription factor S
• DNA-directed RNA polymerase, M/15kDa subunit
• DNA-directed RNA polymerase M, 15kDa subunit, conserved site
• Pol II subunit B9, C-terminal zinc ribbon
• Zinc finger, TFIIS-type

CATH: N-terminal domain of TfIIb
SCOP: Transcriptional factor domain

Chain: J
Length: 70 amino acids
Theoretical weight: 8.29 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P22139 (Residues: 1-70; Coverage: 100%)

Gene names: RPB10, YOR210W
Pfam: RNA polymerases N / 8 kDa subunit
InterPro:

• DNA-directed RNA polymerase subunit RPABC5/Rpb10
• RNA polymerase subunit RPB10
• RNA polymerases, subunit N, zinc binding site

CATH: Homeodomain-like
SCOP: RNA polymerase subunit RPB10

Chain: K
Length: 120 amino acids
Theoretical weight: 13.63 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P38902 (Residues: 1-120; Coverage: 100%)

Gene names: RPB11, YOL005C
Pfam:

• RNA polymerase Rpb3/Rpb11 dimerisation domain
• RNA polymerase Rpb3/Rpb11 dimerisation domain

InterPro:

• RNA polymerase, RBP11-like subunit
• RNA polymerase RBP11
• DNA-directed RNA polymerase subunit Rpo11-like
• DNA-directed RNA polymerase, RBP11-like dimerisation domain
• DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site

CATH: RNA polymerase, RBP11-like subunit
SCOP: RBP11/RpoL

Chain: L
Length: 70 amino acids
Theoretical weight: 7.73 KDa
Source organism: Saccharomyces cerevisiae
UniProt:

• Canonical: P40422 (Residues: 1-70; Coverage: 100%)

Gene names: RPB12, RPC10, YHR143BW, YHR143W-A
Pfam: DNA directed RNA polymerase, 7 kDa subunit
InterPro:

• DNA-directed RNA polymerases I, II, and III subunit RPABC4
• RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
• RNA polymerase subunit RPABC4/transcription elongation factor Spt4

CATH: RNA polymerase ii, chain L
SCOP: RBP12 subunit of RNA polymerase II