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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN

Source organism: Thermus thermophilus
Biochemical function: rRNA binding
Biological process: translation
Cellular component: ribonucleoprotein complex

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF17070
Domain description: 30S ribosomal protein Thx
Occurring in:
  1. Small ribosomal subunit protein bTHX
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF17070 (30S ribosomal protein Thx) in Small ribosomal subunit protein bTHX. Showing 1 copy in chain V.

PF01649
Domain description: Ribosomal protein S20
Occurring in:
  1. Small ribosomal subunit protein bS20
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF01649 (Ribosomal protein S20) in Small ribosomal subunit protein bS20. Showing 1 copy in chain U [auth T].

PF00203
Domain description: Ribosomal protein S19
Occurring in:
  1. Small ribosomal subunit protein uS19
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00203 (Ribosomal protein S19) in Small ribosomal subunit protein uS19. Showing 1 copy in chain T [auth S].

PF01084
Domain description: Ribosomal protein S18
Occurring in:
  1. Small ribosomal subunit protein bS18
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF01084 (Ribosomal protein S18) in Small ribosomal subunit protein bS18. Showing 1 copy in chain S [auth R].

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. Small ribosomal subunit protein uS17
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00366 (Ribosomal protein S17) in Small ribosomal subunit protein uS17. Showing 1 copy in chain R [auth Q].

PF00886
Domain description: Ribosomal protein S16
Occurring in:
  1. Small ribosomal subunit protein bS16
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00886 (Ribosomal protein S16) in Small ribosomal subunit protein bS16. Showing 1 copy in chain Q [auth P].

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15. Showing 1 copy in chain P [auth O].

PF00253
Domain description: Ribosomal protein S14p/S29e
Occurring in:
  1. Small ribosomal subunit protein uS14
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00253 (Ribosomal protein S14p/S29e) in Small ribosomal subunit protein uS14. Showing 1 copy in chain O [auth N].

PF00416
Domain description: Ribosomal protein S13/S18
Occurring in:
  1. Small ribosomal subunit protein uS13
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00416 (Ribosomal protein S13/S18) in Small ribosomal subunit protein uS13. Showing 1 copy in chain N [auth M].

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. Small ribosomal subunit protein uS12
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00164 (Ribosomal protein S12/S23) in Small ribosomal subunit protein uS12. Showing 1 copy in chain M [auth L].

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00411 (Ribosomal protein S11) in Small ribosomal subunit protein uS11. Showing 1 copy in chain L [auth K].

PF00338
Domain description: Ribosomal protein S10p/S20e
Occurring in:
  1. Small ribosomal subunit protein uS10
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00338 (Ribosomal protein S10p/S20e) in Small ribosomal subunit protein uS10. Showing 1 copy in chain K [auth J].

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. Small ribosomal subunit protein uS9
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00380 (Ribosomal protein S9/S16) in Small ribosomal subunit protein uS9. Showing 1 copy in chain J [auth I].

PF00410
Domain description: Ribosomal protein S8
Occurring in:
  1. Small ribosomal subunit protein uS8
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00410 (Ribosomal protein S8) in Small ribosomal subunit protein uS8. Showing 1 copy in chain I [auth H].

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Small ribosomal subunit protein uS7
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00177 (Ribosomal protein S7p/S5e) in Small ribosomal subunit protein uS7. Showing 1 copy in chain H [auth G].

PF01250
Domain description: Ribosomal protein S6
Occurring in:
  1. Small ribosomal subunit protein bS6
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF01250 (Ribosomal protein S6) in Small ribosomal subunit protein bS6. Showing 1 copy in chain G [auth F].

PF03719
Domain description: Ribosomal protein S5, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF03719 (Ribosomal protein S5, C-terminal domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain F [auth E].

PF00333
Domain description: Ribosomal protein S5, N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00333 (Ribosomal protein S5, N-terminal domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain F [auth E].

PF01479
Domain description: S4 domain
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF01479 (S4 domain) in Small ribosomal subunit protein uS4. Showing 1 copy in chain E [auth D].

PF00163
Domain description: Ribosomal protein S4/S9 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00163 (Ribosomal protein S4/S9 N-terminal domain) in Small ribosomal subunit protein uS4. Showing 1 copy in chain E [auth D].

PF00189
Domain description: Ribosomal protein S3, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00189 (Ribosomal protein S3, C-terminal domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain D [auth C].

PF07650
Domain description: KH domain
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF07650 (KH domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain D [auth C].

PF00318
Domain description: Ribosomal protein S2
Occurring in:
  1. Small ribosomal subunit protein uS2
The deposited structure of PDB entry 1hnx contains 1 copy of Pfam domain PF00318 (Ribosomal protein S2) in Small ribosomal subunit protein uS2. Showing 1 copy in chain C [auth B].

Rfam RNA family (Rfam)
RF00177
Domain description: Bacterial small subunit ribosomal RNA
Occurring in:
  1. 16S ribosomal RNA
The deposited structure of PDB entry 1hnx contains 1 copy of Rfam domain RF00177 (Bacterial small subunit ribosomal RNA) in 16S ribosomal RNA. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR005679
Domain description: Ribosomal protein uS12, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS12
IPR001648
Domain description: Small ribosomal subunit protein bS18
Occurring in:
  1. Small ribosomal subunit protein bS18
IPR001865
Domain description: Small ribosomal subunit protein uS2
Occurring in:
  1. Small ribosomal subunit protein uS2
IPR002222
Domain description: Small ribosomal subunit protein uS19
Occurring in:
  1. Small ribosomal subunit protein uS19
IPR000266
Domain description: Small ribosomal subunit protein uS17
Occurring in:
  1. Small ribosomal subunit protein uS17
IPR001848
Domain description: Small ribosomal subunit protein uS10
Occurring in:
  1. Small ribosomal subunit protein uS10
IPR002583
Domain description: Small ribosomal subunit protein bS20
Occurring in:
  1. Small ribosomal subunit protein bS20
IPR000307
Domain description: Small ribosomal subunit protein bS16
Occurring in:
  1. Small ribosomal subunit protein bS16
IPR001892
Domain description: Small ribosomal subunit protein uS13
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR006032
Domain description: Small ribosomal subunit protein uS12
Occurring in:
  1. Small ribosomal subunit protein uS12
IPR012340
Domain description: Nucleic acid-binding, OB-fold
Occurring in:
  1. Small ribosomal subunit protein uS12
  2. Small ribosomal subunit protein uS17
IPR001971
Domain description: Small ribosomal subunit protein uS11
Occurring in:
  1. Small ribosomal subunit protein uS11
IPR000589
Domain description: Small ribosomal subunit protein uS15
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR005290
Domain description: Small ribosomal subunit protein uS15, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR000630
Domain description: Small ribosomal subunit protein uS8
Occurring in:
  1. Small ribosomal subunit protein uS8
IPR000529
Domain description: Small ribosomal subunit protein bS6
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR005706
Domain description: Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid
Occurring in:
  1. Small ribosomal subunit protein uS2
IPR036510
Domain description: Small ribosomal subunit protein bS20 superfamily
Occurring in:
  1. Small ribosomal subunit protein bS20
IPR023575
Domain description: Small ribosomal subunit protein uS19, superfamily
Occurring in:
  1. Small ribosomal subunit protein uS19
IPR036870
Domain description: Small ribosomal subunit protein bS18 superfamily
Occurring in:
  1. Small ribosomal subunit protein bS18
IPR019984
Domain description: Small ribosomal subunit protein uS17, bacteria/chloroplast
Occurring in:
  1. Small ribosomal subunit protein uS17
IPR023803
Domain description: Small ribosomal subunit protein bS16 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein bS16
IPR001209
Domain description: Small ribosomal subunit protein uS14
Occurring in:
  1. Small ribosomal subunit protein uS14
IPR036838
Domain description: Small ribosomal subunit protein uS10 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS10
IPR000754
Domain description: Small ribosomal subunit protein uS9
Occurring in:
  1. Small ribosomal subunit protein uS9
IPR036823
Domain description: Small ribosomal subunit protein uS7 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR000235
Domain description: Small ribosomal subunit protein uS7
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR005717
Domain description: Small ribosomal subunit protein uS7, bacterial/organellar-type
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR020814
Domain description: Small ribosomal subunit protein bS6, plastid/chloroplast
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR014717
Domain description: Translation elongation factor EF1B/small ribosomal subunit protein bS6
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR020568
Domain description: Ribosomal protein uS5 domain 2-type superfamily
Occurring in:
  1. Small ribosomal subunit protein uS5
  2. Small ribosomal subunit protein uS9
IPR014721
Domain description: Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
Occurring in:
  1. Small ribosomal subunit protein uS5
  2. Small ribosomal subunit protein uS9
IPR013810
Domain description: Small ribosomal subunit protein uS5, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR005712
Domain description: Small ribosomal subunit protein uS5, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR002942
Domain description: RNA-binding S4 domain
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR005709
Domain description: Small ribosomal subunit protein uS4, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR036419
Domain description: Ribosomal protein S3, C-terminal domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR004044
Domain description: K Homology domain, type 2
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR005704
Domain description: Small ribosomal subunit protein uS3, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR031414
Domain description: Small ribosomal subunit protein bTHX
Occurring in:
  1. Small ribosomal subunit protein bTHX
IPR030826
Domain description: Small ribosomal subunit protein bTHX/bTHXc/bTHXm
Occurring in:
  1. Small ribosomal subunit protein bTHX
IPR020934
Domain description: Small ribosomal subunit protein uS19, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS19
IPR005732
Domain description: Small ribosomal subunit protein uS19, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS19
IPR018275
Domain description: Small ribosomal subunit protein bS18, conserved site
Occurring in:
  1. Small ribosomal subunit protein bS18
IPR019979
Domain description: Small ribosomal subunit protein uS17, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS17
IPR009068
Domain description: uS15/NS1, RNA-binding domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR018271
Domain description: Small ribosomal subunit protein uS14, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS14
IPR043140
Domain description: Small ribosomal subunit protein uS14 superfamily
Occurring in:
  1. Small ribosomal subunit protein uS14
IPR023053
Domain description: Small ribosomal subunit protein uS14, bacteria
Occurring in:
  1. Small ribosomal subunit protein uS14
IPR018269
Domain description: Small ribosomal subunit protein uS13, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR027437
Domain description: Small ribosomal subunit protein uS13, C-terminal
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR019980
Domain description: Small ribosomal subunit protein uS13, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR010979
Domain description: Small ribosomal subunit protein uS13-like, H2TH
Occurring in:
  1. Small ribosomal subunit protein uS13
IPR018102
Domain description: Small ribosomal subunit protein uS11, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS11
IPR019981
Domain description: Small ribosomal subunit protein uS11, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS11
IPR036967
Domain description: Small ribosomal subunit protein uS11 superfamily
Occurring in:
  1. Small ribosomal subunit protein uS11
IPR018268
Domain description: Small ribosomal subunit protein uS10, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS10
IPR027486
Domain description: Small ribosomal subunit protein uS10 domain
Occurring in:
  1. Small ribosomal subunit protein uS10
IPR020574
Domain description: Small ribosomal subunit protein uS9, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS9
IPR023035
Domain description: Small ribosomal subunit protein uS9, bacterial/plastid
Occurring in:
  1. Small ribosomal subunit protein uS9
IPR047863
Domain description: Small ribosomal subunit protein uS8, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS8
IPR035987
Domain description: Small ribosomal subunit protein uS8 superfamily
Occurring in:
  1. Small ribosomal subunit protein uS8
IPR020606
Domain description: Small ribosomal subunit protein uS7, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR023798
Domain description: Small ribosomal subunit protein uS7 domain
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR020815
Domain description: Small ribosomal subunit protein bS6, conserved site
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR035980
Domain description: Small ribosomal subunit protein bS6 superfamily
Occurring in:
  1. Small ribosomal subunit protein bS6
IPR005324
Domain description: Small ribosomal subunit protein uS5, C-terminal
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR018192
Domain description: Small ribosomal subunit protein uS5, N-terminal, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR000851
Domain description: Small ribosomal subunit protein uS5
Occurring in:
  1. Small ribosomal subunit protein uS5
IPR036986
Domain description: RNA-binding S4 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR018079
Domain description: Small ribosomal subunit protein uS4, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR022801
Domain description: Small ribosomal subunit protein uS4
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR001912
Domain description: Small ribosomal subunit protein uS4, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS4
IPR018280
Domain description: Small ribosomal subunit protein uS3, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR001351
Domain description: Small ribosomal subunit protein uS3, C-terminal
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR004087
Domain description: K Homology domain
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR015946
Domain description: K homology domain-like, alpha/beta
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR009019
Domain description: K homology domain superfamily, prokaryotic type
Occurring in:
  1. Small ribosomal subunit protein uS3
IPR023591
Domain description: Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS2
IPR018130
Domain description: Small ribosomal subunit protein uS2, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS2

Structure domains

CATH CATH domains
2.40.50.140
Class: Mainly Beta
Architecture: Beta Barrel
Topology: OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homology: Nucleic acid-binding proteins
Occurring in:
  1. Small ribosomal subunit protein uS12
  2. Small ribosomal subunit protein uS17
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 2.40.50.140 (OB fold (Dihydrolipoamide Acetyltransferase, E2P)) in Small ribosomal subunit protein uS12. Showing 1 copy in chain M [auth L].
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 2.40.50.140 (OB fold (Dihydrolipoamide Acetyltransferase, E2P)) in Small ribosomal subunit protein uS17. Showing 1 copy in chain R [auth Q].
3.30.230.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Ribosomal Protein S5; domain 2
Homology: Ribosomal Protein S5; domain 2
Occurring in:
  1. Small ribosomal subunit protein uS5
  2. Small ribosomal subunit protein uS9
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.230.10 (Ribosomal Protein S5; domain 2) in Small ribosomal subunit protein uS5. Showing 1 copy in chain F [auth E].
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.230.10 (Ribosomal Protein S5; domain 2) in Small ribosomal subunit protein uS9. Showing 1 copy in chain J [auth I].
1.10.1050.10
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Ribosomal Protein S4 Delta 41; Chain A, domain 1
Homology: Ribosomal Protein S4 Delta 41; Chain A, domain 1
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 1.10.1050.10 (Ribosomal Protein S4 Delta 41; Chain A, domain 1) in Small ribosomal subunit protein uS4. Showing 1 copy in chain E [auth D].
3.40.50.10490
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: Rossmann fold
Homology: Glucose-6-phosphate isomerase like protein; domain 1
Occurring in:
  1. Small ribosomal subunit protein uS2
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.40.50.10490 (Rossmann fold) in Small ribosomal subunit protein uS2. Showing 1 copy in chain C [auth B].
1.20.58.110
Class: Mainly Alpha
Architecture: Up-down Bundle
Topology: Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homology: Ribosomal protein S20
Occurring in:
  1. Small ribosomal subunit protein bS20
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 1.20.58.110 (Methane Monooxygenase Hydroxylase; Chain G, domain 1) in Small ribosomal subunit protein bS20. Showing 1 copy in chain U [auth T].
3.30.860.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: 30s Ribosomal Protein S19; Chain A
Homology: 30s Ribosomal Protein S19; Chain A
Occurring in:
  1. Small ribosomal subunit protein uS19
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.860.10 (30s Ribosomal Protein S19; Chain A) in Small ribosomal subunit protein uS19. Showing 1 copy in chain T [auth S].
4.10.640.10
Class: Few Secondary Structures
Architecture: Irregular
Topology: 30s Ribosomal Protein S18
Homology: Ribosomal protein S18
Occurring in:
  1. Small ribosomal subunit protein bS18
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 4.10.640.10 (30s Ribosomal Protein S18) in Small ribosomal subunit protein bS18. Showing 1 copy in chain S [auth R].
3.30.1320.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: S16 Ribosomal Protein; Chain: A;
Homology: S16 Ribosomal Protein; Chain: A;
Occurring in:
  1. Small ribosomal subunit protein bS16
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.1320.10 (S16 Ribosomal Protein; Chain: A;) in Small ribosomal subunit protein bS16. Showing 1 copy in chain Q [auth P].
1.10.287.10
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Helix Hairpins
Homology: S15/NS1, RNA-binding
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 1.10.287.10 (Helix Hairpins) in Small ribosomal subunit protein uS15. Showing 1 copy in chain P [auth O].
4.10.830.10
Class: Few Secondary Structures
Architecture: Irregular
Topology: 30s Ribosomal Protein S14; Chain N
Homology: 30s Ribosomal Protein S14; Chain N
Occurring in:
  1. Small ribosomal subunit protein uS14
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 4.10.830.10 (30s Ribosomal Protein S14; Chain N) in Small ribosomal subunit protein uS14. Showing 1 copy in chain O [auth N].
4.10.910.10
Class: Few Secondary Structures
Architecture: Irregular
Topology: 30s ribosomal protein s13; domain 2
Homology: 30s ribosomal protein s13, domain 2
Occurring in:
  1. Small ribosomal subunit protein uS13
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 4.10.910.10 (30s ribosomal protein s13; domain 2) in Small ribosomal subunit protein uS13. Showing 1 copy in chain N [auth M].
1.10.8.50
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Helicase, Ruva Protein; domain 3
Homology: Helicase, Ruva Protein; domain 3
Occurring in:
  1. Small ribosomal subunit protein uS13
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 1.10.8.50 (Helicase, Ruva Protein; domain 3) in Small ribosomal subunit protein uS13. Showing 1 copy in chain N [auth M].
3.30.420.80
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Nucleotidyltransferase; domain 5
Homology: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.420.80 (Nucleotidyltransferase; domain 5) in Small ribosomal subunit protein uS11. Showing 1 copy in chain L [auth K].
3.30.70.600
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Alpha-Beta Plaits
Homology: Ribosomal protein S10 domain
Occurring in:
  1. Small ribosomal subunit protein uS10
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.70.600 (Alpha-Beta Plaits) in Small ribosomal subunit protein uS10. Showing 1 copy in chain K [auth J].
3.30.1490.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Dna Ligase; domain 1
Homology: Dna Ligase; domain 1
Occurring in:
  1. Small ribosomal subunit protein uS8
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.1490.10 (Dna Ligase; domain 1) in Small ribosomal subunit protein uS8. Showing 1 copy in chain I [auth H].
3.30.1370.30
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Ribosomal Protein S8; Chain: A, domain 1
Homology: Ribosomal Protein S8; Chain: A, domain 1
Occurring in:
  1. Small ribosomal subunit protein uS8
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.1370.30 (Ribosomal Protein S8; Chain: A, domain 1) in Small ribosomal subunit protein uS8. Showing 1 copy in chain I [auth H].
1.10.455.10
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Ribosomal Protein S7
Homology: Ribosomal protein S7 domain
Occurring in:
  1. Small ribosomal subunit protein uS7
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 1.10.455.10 (Ribosomal Protein S7) in Small ribosomal subunit protein uS7. Showing 1 copy in chain H [auth G].
3.30.70.60
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Alpha-Beta Plaits
Homology: Alpha-Beta Plaits
Occurring in:
  1. Small ribosomal subunit protein bS6
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.70.60 (Alpha-Beta Plaits) in Small ribosomal subunit protein bS6. Showing 1 copy in chain G [auth F].
3.30.160.20
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Double Stranded RNA Binding Domain
Homology: Double Stranded RNA Binding Domain
Occurring in:
  1. Small ribosomal subunit protein uS5
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.160.20 (Double Stranded RNA Binding Domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain F [auth E].
3.10.290.10
Class: Alpha Beta
Architecture: Roll
Topology: Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A
Homology: RNA-binding S4 domain
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.10.290.10 (Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A) in Small ribosomal subunit protein uS4. Showing 1 copy in chain E [auth D].
3.30.1140.32
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Ribosomal protein S3 C-terminal domain
Homology: Ribosomal protein S3, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.1140.32 (Ribosomal protein S3 C-terminal domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain D [auth C].
3.30.300.20
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: GMP Synthetase; Chain A, domain 3
Homology: GMP Synthetase; Chain A, domain 3
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 3.30.300.20 (GMP Synthetase; Chain A, domain 3) in Small ribosomal subunit protein uS3. Showing 1 copy in chain D [auth C].
1.10.287.610
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Helix Hairpins
Homology: Helix hairpin bin
Occurring in:
  1. Small ribosomal subunit protein uS2
The deposited structure of PDB entry 1hnx contains 1 copy of CATH domain 1.10.287.610 (Helix Hairpins) in Small ribosomal subunit protein uS2. Showing 1 copy in chain C [auth B].
SCOP SCOP annotations
50282
Class: All beta proteins
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Occurring in:
  1. Small ribosomal subunit protein uS12
  2. Small ribosomal subunit protein uS17
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 50282 (Cold shock DNA-binding domain-like) in Small ribosomal subunit protein uS12. Showing 1 copy in chain M [auth L].
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 50282 (Cold shock DNA-binding domain-like) in Small ribosomal subunit protein uS17. Showing 1 copy in chain R [auth Q].
54212
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein S5 domain 2-like
Superfamily: Ribosomal protein S5 domain 2-like
Occurring in:
  1. Small ribosomal subunit protein uS5
  2. Small ribosomal subunit protein uS9
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 54212 (Translational machinery components) in Small ribosomal subunit protein uS5. Showing 1 copy in chain F [auth E].
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 54212 (Translational machinery components) in Small ribosomal subunit protein uS9. Showing 1 copy in chain J [auth I].
58323
Class: Peptides
Fold: Arg-rich RNA binding peptides
Superfamily: 30S ribosomal protein THX
Occurring in:
  1. Small ribosomal subunit protein bTHX
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 58323 (30S ribosomal protein THX) in Small ribosomal subunit protein bTHX. Showing 1 copy in chain V.
46993
Class: All alpha proteins
Fold: Spectrin repeat-like
Superfamily: Ribosomal protein S20
Occurring in:
  1. Small ribosomal subunit protein bS20
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 46993 (Ribosomal protein S20) in Small ribosomal subunit protein bS20. Showing 1 copy in chain U [auth T].
54571
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein S19
Superfamily: Ribosomal protein S19
Occurring in:
  1. Small ribosomal subunit protein uS19
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 54571 (Ribosomal protein S19) in Small ribosomal subunit protein uS19. Showing 1 copy in chain T [auth S].
46912
Class: All alpha proteins
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Ribosomal protein S18
Occurring in:
  1. Small ribosomal subunit protein bS18
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 46912 (Ribosomal protein S18) in Small ribosomal subunit protein bS18. Showing 1 copy in chain S [auth R].
54566
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein S16
Superfamily: Ribosomal protein S16
Occurring in:
  1. Small ribosomal subunit protein bS16
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 54566 (Ribosomal protein S16) in Small ribosomal subunit protein bS16. Showing 1 copy in chain Q [auth P].
47064
Class: All alpha proteins
Fold: S15/NS1 RNA-binding domain
Superfamily: S15/NS1 RNA-binding domain
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 47064 (Ribosomal protein S15) in Small ribosomal subunit protein uS15. Showing 1 copy in chain P [auth O].
57752
Class: Small proteins
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Occurring in:
  1. Small ribosomal subunit protein uS14
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 57752 (Ribosomal protein S14) in Small ribosomal subunit protein uS14. Showing 1 copy in chain O [auth N].
46947
Class: All alpha proteins
Fold: S13-like H2TH domain
Superfamily: S13-like H2TH domain
Occurring in:
  1. Small ribosomal subunit protein uS13
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 46947 (Ribosomal protein S13) in Small ribosomal subunit protein uS13. Showing 1 copy in chain N [auth M].
53138
Class: Alpha and beta proteins (a/b)
Fold: Ribonuclease H-like motif
Superfamily: Translational machinery components
Occurring in:
  1. Small ribosomal subunit protein uS11
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 53138 (Ribosomal protein L18 and S11) in Small ribosomal subunit protein uS11. Showing 1 copy in chain L [auth K].
55000
Class: Alpha and beta proteins (a+b)
Fold: Ferredoxin-like
Superfamily: Ribosomal protein S10
Occurring in:
  1. Small ribosomal subunit protein uS10
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 55000 (Ribosomal protein S10) in Small ribosomal subunit protein uS10. Showing 1 copy in chain K [auth J].
56048
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein S8
Superfamily: Ribosomal protein S8
Occurring in:
  1. Small ribosomal subunit protein uS8
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 56048 (Ribosomal protein S8) in Small ribosomal subunit protein uS8. Showing 1 copy in chain I [auth H].
47974
Class: All alpha proteins
Fold: Ribosomal protein S7
Superfamily: Ribosomal protein S7
Occurring in:
  1. Small ribosomal subunit protein uS7
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 47974 (Ribosomal protein S7) in Small ribosomal subunit protein uS7. Showing 1 copy in chain H [auth G].
54996
Class: Alpha and beta proteins (a+b)
Fold: Ferredoxin-like
Superfamily: Ribosomal protein S6
Occurring in:
  1. Small ribosomal subunit protein bS6
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 54996 (Ribosomal protein S6) in Small ribosomal subunit protein bS6. Showing 1 copy in chain G [auth F].
54778
Class: Alpha and beta proteins (a+b)
Fold: dsRBD-like
Superfamily: dsRNA-binding domain-like
Occurring in:
  1. Small ribosomal subunit protein uS5
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 54778 (Ribosomal S5 protein, N-terminal domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain F [auth E].
55178
Class: Alpha and beta proteins (a+b)
Fold: Alpha-L RNA-binding motif
Superfamily: Alpha-L RNA-binding motif
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 55178 (Ribosomal protein S4) in Small ribosomal subunit protein uS4. Showing 1 copy in chain E [auth D].
54822
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein S3 C-terminal domain
Superfamily: Ribosomal protein S3 C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 54822 (Ribosomal protein S3 C-terminal domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain D [auth C].
54815
Class: Alpha and beta proteins (a+b)
Fold: Alpha-lytic protease prodomain-like
Superfamily: Prokaryotic type KH domain (KH-domain type II)
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 54815 (Prokaryotic type KH domain (KH-domain type II)) in Small ribosomal subunit protein uS3. Showing 1 copy in chain D [auth C].
52314
Class: Alpha and beta proteins (a/b)
Fold: Flavodoxin-like
Superfamily: Ribosomal protein S2
Occurring in:
  1. Small ribosomal subunit protein uS2
The deposited structure of PDB entry 1hnx contains 1 copy of SCOP domain 52314 (Ribosomal protein S2) in Small ribosomal subunit protein uS2. Showing 1 copy in chain C [auth B].

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