Reviews - 1gcm mentioned but not cited (3)
- De novo protein design, a retrospective. Korendovych IV, DeGrado WF. Q Rev Biophys 53 e3 (2020)
- The Structure and Topology of α-Helical Coiled Coils. Lupas AN, Bassler J, Dunin-Horkawicz S. Subcell Biochem 82 95-129 (2017)
- Protein Design: From the Aspect of Water Solubility and Stability. Qing R, Hao S, Smorodina E, Jin D, Zalevsky A, Zhang S. Chem Rev 122 14085-14179 (2022)
Articles - 1gcm mentioned but not cited (12)
- A coiled-coil motif that sequesters ions to the hydrophobic core. Hartmann MD, Ridderbusch O, Zeth K, Albrecht R, Testa O, Woolfson DN, Sauer G, Dunin-Horkawicz S, Lupas AN, Alvarez BH. Proc Natl Acad Sci U S A 106 16950-16955 (2009)
- Structure of the HIV-1 gp41 membrane-proximal ectodomain region in a putative prefusion conformation. Liu J, Deng Y, Dey AK, Moore JP, Lu M. Biochemistry 48 2915-2923 (2009)
- Complete fiber structures of complex trimeric autotransporter adhesins conserved in enterobacteria. Hartmann MD, Grin I, Dunin-Horkawicz S, Deiss S, Linke D, Lupas AN, Hernandez Alvarez B. Proc Natl Acad Sci U S A 109 20907-20912 (2012)
- Mapping of the laminin-binding site of the N-terminal agrin domain (NtA). Mascarenhas JB, Rüegg MA, Winzen U, Halfter W, Engel J, Stetefeld J. EMBO J 22 529-536 (2003)
- Structural basis of IL-23 antagonism by an Alphabody protein scaffold. Desmet J, Verstraete K, Bloch Y, Lorent E, Wen Y, Devreese B, Vandenbroucke K, Loverix S, Hettmann T, Deroo S, Somers K, Henderikx P, Lasters I, Savvides SN. Nat Commun 5 5237 (2014)
- Template-based coiled-coil antigens elicit neutralizing antibodies to the SARS-coronavirus. Tripet B, Kao DJ, Jeffers SA, Holmes KV, Hodges RS. J Struct Biol 155 176-194 (2006)
- Immunosilencing a highly immunogenic protein trimerization domain. Sliepen K, van Montfort T, Melchers M, Isik G, Sanders RW. J Biol Chem 290 7436-7442 (2015)
- Structure-Based Design of Head-Only Fusion Glycoprotein Immunogens for Respiratory Syncytial Virus. Boyington JC, Joyce MG, Sastry M, Stewart-Jones GB, Chen M, Kong WP, Ngwuta JO, Thomas PV, Tsybovsky Y, Yang Y, Zhang B, Chen L, Druz A, Georgiev IS, Ko K, Zhou T, Mascola JR, Graham BS, Kwong PD. PLoS One 11 e0159709 (2016)
- Designed coiled coils promote folding of a recombinant bacterial collagen. Yoshizumi A, Fletcher JM, Yu Z, Persikov AV, Bartlett GJ, Boyle AL, Vincent TL, Woolfson DN, Brodsky B. J Biol Chem 286 17512-17520 (2011)
- Death receptor-based enrichment of Cas9-expressing cells. Liesche C, Venkatraman L, Aschenbrenner S, Grosse S, Grimm D, Eils R, Beaudouin J. BMC Biotechnol 16 17 (2016)
- Structure of the UspA1 protein fragment from Moraxella catarrhalis responsible for C3d binding. Mikula KM, Kolodziejczyk R, Goldman A. J Struct Biol 208 77-85 (2019)
- Design, production and immunomodulatory potency of a novel allergen bioparticle. Gomord V, Stordeur V, Fitchette AC, Fixman ED, Tropper G, Garnier L, Desgagnes R, Viel S, Couillard J, Beauverger G, Trepout S, Ward BJ, van Ree R, Faye L, Vézina LP. PLoS One 15 e0242867 (2020)
Reviews citing this publication (32)
- De novo design and structural characterization of proteins and metalloproteins. DeGrado WF, Summa CM, Pavone V, Nastri F, Lombardi A. Annu Rev Biochem 68 779-819 (1999)
- Structural basis for membrane fusion by enveloped viruses. Weissenhorn W, Dessen A, Calder LJ, Harrison SC, Skehel JJ, Wiley DC. Mol Membr Biol 16 3-9 (1999)
- Structural basis of viral invasion: lessons from paramyxovirus F. Lamb RA, Jardetzky TS. Curr Opin Struct Biol 17 427-436 (2007)
- Heptad breaks in alpha-helical coiled coils: stutters and stammers. Brown JH, Cohen C, Parry DA. Proteins 26 134-145 (1996)
- Predicting coiled-coil regions in proteins. Lupas A. Curr Opin Struct Biol 7 388-393 (1997)
- Protein design: toward functional metalloenzymes. Yu F, Cangelosi VM, Zastrow ML, Tegoni M, Plegaria JS, Tebo AG, Mocny CS, Ruckthong L, Qayyum H, Pecoraro VL. Chem Rev 114 3495-3578 (2014)
- Molecular biology of Hendra and Nipah viruses. Wang L, Harcourt BH, Yu M, Tamin A, Rota PA, Bellini WJ, Eaton BT. Microbes Infect 3 279-287 (2001)
- Fifty years of coiled-coils and alpha-helical bundles: a close relationship between sequence and structure. Parry DA, Fraser RD, Squire JM, Squire JM. J Struct Biol 163 258-269 (2008)
- Supercoiled protein motifs: the collagen triple-helix and the alpha-helical coiled coil. Beck K, Brodsky B. J Struct Biol 122 17-29 (1998)
- Native-like Env trimers as a platform for HIV-1 vaccine design. Sanders RW, Moore JP. Immunol Rev 275 161-182 (2017)
- Structures of thrombospondins. Carlson CB, Lawler J, Mosher DF. Cell Mol Life Sci 65 672-686 (2008)
- Sequence space, folding and protein design. Cordes MH, Davidson AR, Sauer RT. Curr Opin Struct Biol 6 3-10 (1996)
- Enveloped viruses: a common mode of membrane fusion?. Hughson FM. Curr Biol 7 R565-9 (1997)
- How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles. DeGrado WF, Gratkowski H, Lear JD. Protein Sci 12 647-665 (2003)
- Coiled-coils: stability, specificity, and drug delivery potential. Yu YB. Adv Drug Deliv Rev 54 1113-1129 (2002)
- Coiled Coils - A Model System for the 21st Century. Lupas AN, Bassler J. Trends Biochem Sci 42 130-140 (2017)
- Native-like and structurally characterized designed alpha-helical bundles. Betz SF, Bryson JW, DeGrado WF. Curr Opin Struct Biol 5 457-463 (1995)
- Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization. Hashimoto K, Nishi H, Bryant S, Panchenko AR. Phys Biol 8 035007 (2011)
- Alpha-helical coiled-coil oligomerization domains in extracellular proteins. Kammerer RA. Matrix Biol 15 555-65; discussion 567-8 (1997)
- Review: compilation and characteristics of dedicated transcription factors in Saccharomyces cerevisiae. Svetlov VV, Cooper TG. Yeast 11 1439-1484 (1995)
- Modeling transmembrane helical oligomers. Dieckmann GR, DeGrado WF. Curr Opin Struct Biol 7 486-494 (1997)
- The use of coiled-coil proteins in drug delivery systems. McFarlane AA, Orriss GL, Stetefeld J. Eur J Pharmacol 625 101-107 (2009)
- Paramyxovirus entry. Bossart KN, Fusco DL, Broder CC. Adv Exp Med Biol 790 95-127 (2013)
- Analysis and design of three-stranded coiled coils and three-helix bundles. Schneider JP, Lombardi A, DeGrado WF. Fold Des 3 R29-40 (1998)
- Trimeric C-type lectin domains in host defence. Hoppe HJ, Reid KB. Structure 2 1129-1133 (1994)
- Evolutionary, physicochemical, and functional mechanisms of protein homooligomerization. Nishi H, Hashimoto K, Madej T, Panchenko AR. Prog Mol Biol Transl Sci 117 3-24 (2013)
- The accommodation index measures the perturbation associated with insertions and deletions in coiled-coils: Application to understand signaling in histidine kinases. Schmidt NW, Grigoryan G, DeGrado WF. Protein Sci 26 414-435 (2017)
- The Current Status of COVID-19 Vaccines. Lundstrom K. Front Genome Ed 2 579297 (2020)
- Biomaterials Made from Coiled-Coil Peptides. Conticello V, Hughes S, Modlin C. Subcell Biochem 82 575-600 (2017)
- A silk purse from a sow's ear-bioinspired materials based on α-helical coiled coils. Quinlan RA, Bromley EH, Pohl E. Curr Opin Cell Biol 32 131-137 (2015)
- Stabilisation of Viral Membrane Fusion Proteins in Prefusion Conformation by Structure-Based Design for Structure Determination and Vaccine Development. Ebel H, Benecke T, Vollmer B. Viruses 14 1816 (2022)
- Understanding a protein fold: The physics, chemistry, and biology of α-helical coiled coils. Woolfson DN. J Biol Chem 299 104579 (2023)
Articles citing this publication (230)
- Core structure of gp41 from the HIV envelope glycoprotein. Chan DC, Fass D, Berger JM, Kim PS. Cell 89 263-273 (1997)
- Atomic structure of the ectodomain from HIV-1 gp41. Weissenhorn W, Dessen A, Harrison SC, Skehel JJ, Wiley DC. Nature 387 426-430 (1997)
- A trimeric structural domain of the HIV-1 transmembrane glycoprotein. Lu M, Blacklow SC, Kim PS. Nat Struct Biol 2 1075-1082 (1995)
- MultiCoil: a program for predicting two- and three-stranded coiled coils. Wolf E, Kim PS, Berger B. Protein Sci 6 1179-1189 (1997)
- Atomic structure of a thermostable subdomain of HIV-1 gp41. Tan K, Liu J, Wang J, Shen S, Lu M. Proc Natl Acad Sci U S A 94 12303-12308 (1997)
- Stabilization of the soluble, cleaved, trimeric form of the envelope glycoprotein complex of human immunodeficiency virus type 1. Sanders RW, Vesanen M, Schuelke N, Master A, Schiffner L, Kalyanaraman R, Paluch M, Berkhout B, Maddon PJ, Olson WC, Lu M, Moore JP. J Virol 76 8875-8889 (2002)
- Structure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation. Yin HS, Wen X, Paterson RG, Lamb RA, Jardetzky TS. Nature 439 38-44 (2006)
- Retrovirus envelope domain at 1.7 angstrom resolution. Fass D, Harrison SC, Kim PS. Nat Struct Biol 3 465-469 (1996)
- Crystal structure of dimeric HIV-1 capsid protein. Momany C, Kovari LC, Prongay AJ, Keller W, Gitti RK, Lee BM, Gorbalenya AE, Tong L, McClure J, Ehrlich LS, Summers MF, Carter C, Rossmann MG. Nat Struct Biol 3 763-770 (1996)
- Efficient particle production by minimal Gag constructs which retain the carboxy-terminal domain of human immunodeficiency virus type 1 capsid-p2 and a late assembly domain. Accola MA, Strack B, Göttlinger HG. J Virol 74 5395-5402 (2000)
- Polar side chains drive the association of model transmembrane peptides. Gratkowski H, Lear JD, DeGrado WF. Proc Natl Acad Sci U S A 98 880-885 (2001)
- Molecular characterization of Nipah virus, a newly emergent paramyxovirus. Harcourt BH, Tamin A, Ksiazek TG, Rollin PE, Anderson LJ, Bellini WJ, Rota PA. Virology 271 334-349 (2000)
- Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9-A resolution. Malashkevich VN, Schneider BJ, McNally ML, Milhollen MA, Pang JX, Kim PS. Proc Natl Acad Sci U S A 96 2662-2667 (1999)
- Trimeric structure of a C-type mannose-binding protein. Weis WI, Drickamer K. Structure 2 1227-1240 (1994)
- Analysis of alpha-helical coiled coils with the program TWISTER reveals a structural mechanism for stutter compensation. Strelkov SV, Burkhard P. J Struct Biol 137 54-64 (2002)
- Automated protein crystal structure determination using ELVES. Holton J, Alber T. Proc Natl Acad Sci U S A 101 1537-1542 (2004)
- Buried polar residues and structural specificity in the GCN4 leucine zipper. Gonzalez L, Woolfson DN, Alber T. Nat Struct Biol 3 1011-1018 (1996)
- Structure of bacteriophage T4 fibritin: a segmented coiled coil and the role of the C-terminal domain. Tao Y, Strelkov SV, Mesyanzhinov VV, Rossmann MG. Structure 5 789-798 (1997)
- Human mannose-binding protein carbohydrate recognition domain trimerizes through a triple alpha-helical coiled-coil. Sheriff S, Chang CY, Ezekowitz RA. Nat Struct Biol 1 789-794 (1994)
- Predicting oligomerization states of coiled coils. Woolfson DN, Alber T. Protein Sci 4 1596-1607 (1995)
- Cortexillins, major determinants of cell shape and size, are actin-bundling proteins with a parallel coiled-coil tail. Faix J, Steinmetz M, Boves H, Kammerer RA, Lottspeich F, Mintert U, Murphy J, Stock A, Aebi U, Gerisch G. Cell 86 631-642 (1996)
- Negative regulation of the heat shock transcriptional response by HSBP1. Satyal SH, Chen D, Fox SG, Kramer JM, Morimoto RI. Genes Dev 12 1962-1974 (1998)
- Solution structure and dynamics of a de novo designed three-helix bundle protein. Walsh ST, Cheng H, Bryson JW, Roder H, DeGrado WF. Proc Natl Acad Sci U S A 96 5486-5491 (1999)
- Crystallographic analysis of CD40 recognition and signaling by human TRAF2. McWhirter SM, Pullen SS, Holton JM, Crute JJ, Kehry MR, Alber T. Proc Natl Acad Sci U S A 96 8408-8413 (1999)
- The human mitochondrial transcription termination factor (mTERF) is a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions. Fernandez-Silva P, Martinez-Azorin F, Micol V, Attardi G. EMBO J 16 1066-1079 (1997)
- Probing designability via a generalized model of helical bundle geometry. Grigoryan G, Degrado WF. J Mol Biol 405 1079-1100 (2011)
- Repacking protein cores with backbone freedom: structure prediction for coiled coils. Harbury PB, Tidor B, Kim PS. Proc Natl Acad Sci U S A 92 8408-8412 (1995)
- A seven-helix coiled coil. Liu J, Zheng Q, Deng Y, Cheng CS, Kallenbach NR, Lu M. Proc Natl Acad Sci U S A 103 15457-15462 (2006)
- Coiled-coil irregularities and instabilities in group A Streptococcus M1 are required for virulence. McNamara C, Zinkernagel AS, Macheboeuf P, Cunningham MW, Nizet V, Ghosh P. Science 319 1405-1408 (2008)
- A distinct 14 residue site triggers coiled-coil formation in cortexillin I. Steinmetz MO, Stock A, Schulthess T, Landwehr R, Lustig A, Faix J, Gerisch G, Aebi U, Kammerer RA. EMBO J 17 1883-1891 (1998)
- The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism. Zhou GP. J Theor Biol 284 142-148 (2011)
- Coiled coils direct assembly of a cold-activated TRP channel. Tsuruda PR, Julius D, Minor DL. Neuron 51 201-212 (2006)
- Crystal structure of reovirus attachment protein σ1 in complex with sialylated oligosaccharides. Reiter DM, Frierson JM, Halvorson EE, Kobayashi T, Dermody TS, Stehle T. PLoS Pathog 7 e1002166 (2011)
- Lipid-peptide vesicle nanoscale hybrids for triggered drug release by mild hyperthermia in vitro and in vivo. Al-Ahmady ZS, Al-Jamal WT, Bossche JV, Bui TT, Drake AF, Mason AJ, Kostarelos K. ACS Nano 6 9335-9346 (2012)
- The coiled-coil trigger site of the rod domain of cortexillin I unveils a distinct network of interhelical and intrahelical salt bridges. Burkhard P, Kammerer RA, Steinmetz MO, Bourenkov GP, Aebi U. Structure 8 223-230 (2000)
- Peptide nanoparticles as novel immunogens: design and analysis of a prototypic severe acute respiratory syndrome vaccine. Pimentel TA, Yan Z, Jeffers SA, Holmes KV, Hodges RS, Burkhard P. Chem Biol Drug Des 73 53-61 (2009)
- Crystal structure of the trimeric alpha-helical coiled-coil and the three lectin domains of human lung surfactant protein D. Håkansson K, Lim NK, Hoppe HJ, Reid KB. Structure 7 255-264 (1999)
- From coiled coils to small globular proteins: design of a native-like three-helix bundle. Bryson JW, Desjarlais JR, Handel TM, DeGrado WF. Protein Sci 7 1404-1414 (1998)
- The role of protonation and metal chelation preferences in defining the properties of mercury-binding coiled coils. Dieckmann GR, McRorie DK, Lear JD, Sharp KA, DeGrado WF, Pecoraro VL. J Mol Biol 280 897-912 (1998)
- Functional analysis of adenovirus protein IX identifies domains involved in capsid stability, transcriptional activity, and nuclear reorganization. Rosa-Calatrava M, Grave L, Puvion-Dutilleul F, Chatton B, Kedinger C. J Virol 75 7131-7141 (2001)
- Assembly properties of human immunodeficiency virus type 1 Gag-leucine zipper chimeras: implications for retrovirus assembly. Crist RM, Datta SA, Stephen AG, Soheilian F, Mirro J, Fisher RJ, Nagashima K, Rein A. J Virol 83 2216-2225 (2009)
- An engineered allosteric switch in leucine-zipper oligomerization. Gonzalez L, Plecs JJ, Alber T. Nat Struct Biol 3 510-515 (1996)
- Role of chain pairing for the production of functional soluble IA major histocompatibility complex class II molecules. Scott CA, Garcia KC, Carbone FR, Wilson IA, Teyton L. J Exp Med 183 2087-2095 (1996)
- DISC1: Structure, Function, and Therapeutic Potential for Major Mental Illness. Soares DC, Carlyle BC, Bradshaw NJ, Porteous DJ. ACS Chem Neurosci 2 609-632 (2011)
- An FTS/Hook/p107(FHIP) complex interacts with and promotes endosomal clustering by the homotypic vacuolar protein sorting complex. Xu L, Sowa ME, Chen J, Li X, Gygi SP, Harper JW. Mol Biol Cell 19 5059-5071 (2008)
- Core structure of the outer membrane lipoprotein from Escherichia coli at 1.9 A resolution. Shu W, Liu J, Ji H, Lu M. J Mol Biol 299 1101-1112 (2000)
- Distinct conformational states of HIV-1 gp41 are recognized by neutralizing and non-neutralizing antibodies. Frey G, Chen J, Rits-Volloch S, Freeman MM, Zolla-Pazner S, Chen B. Nat Struct Mol Biol 17 1486-1491 (2010)
- Coiled-coil trigger motifs in the 1B and 2B rod domain segments are required for the stability of keratin intermediate filaments. Wu KC, Bryan JT, Morasso MI, Jang SI, Lee JH, Yang JM, Marekov LN, Parry DA, Steinert PM. Mol Biol Cell 11 3539-3558 (2000)
- Crystal structures of human cardiac beta-myosin II S2-Delta provide insight into the functional role of the S2 subfragment. Blankenfeldt W, Thomä NH, Wray JS, Gautel M, Schlichting I. Proc Natl Acad Sci U S A 103 17713-17717 (2006)
- Mutations in CERS3 cause autosomal recessive congenital ichthyosis in humans. Radner FP, Marrakchi S, Kirchmeier P, Kim GJ, Ribierre F, Kamoun B, Abid L, Leipoldt M, Turki H, Schempp W, Heilig R, Lathrop M, Fischer J. PLoS Genet 9 e1003536 (2013)
- Structure of the Newcastle disease virus F protein in the post-fusion conformation. Swanson K, Wen X, Leser GP, Paterson RG, Lamb RA, Jardetzky TS. Virology 402 372-379 (2010)
- A conserved trimerization motif controls the topology of short coiled coils. Kammerer RA, Kostrewa D, Progias P, Honnappa S, Avila D, Lustig A, Winkler FK, Pieters J, Steinmetz MO. Proc Natl Acad Sci U S A 102 13891-13896 (2005)
- CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies. Wood CW, Bruning M, Ibarra AÁ, Bartlett GJ, Thomson AR, Sessions RB, Brady RL, Woolfson DN. Bioinformatics 30 3029-3035 (2014)
- Crystal structures of a single coiled-coil peptide in two oligomeric states reveal the basis for structural polymorphism. Gonzalez L, Brown RA, Richardson D, Alber T. Nat Struct Biol 3 1002-1009 (1996)
- On the domain structure and the polymerization state of the sendai virus P protein. Tarbouriech N, Curran J, Ebel C, Ruigrok RW, Burmeister WP. Virology 266 99-109 (2000)
- Stabilization of human immunodeficiency virus type 1 envelope glycoprotein trimers by disulfide bonds introduced into the gp41 glycoprotein ectodomain. Farzan M, Choe H, Desjardins E, Sun Y, Kuhn J, Cao J, Archambault D, Kolchinsky P, Koch M, Wyatt R, Sodroski J. J Virol 72 7620-7625 (1998)
- Design of a minimal protein oligomerization domain by a structural approach. Burkhard P, Meier M, Lustig A. Protein Sci 9 2294-2301 (2000)
- Lumbricus erythrocruorin at 3.5 A resolution: architecture of a megadalton respiratory complex. Royer WE, Sharma H, Strand K, Knapp JE, Bhyravbhatla B. Structure 14 1167-1177 (2006)
- A heterodimeric coiled-coil peptide pair selected in vivo from a designed library-versus-library ensemble. Arndt KM, Pelletier JN, Müller KM, Alber T, Michnick SW, Plückthun A. J Mol Biol 295 627-639 (2000)
- Buried asparagines determine the dimerization specificities of leucine zipper mutants. Zeng X, Herndon AM, Hu JC. Proc Natl Acad Sci U S A 94 3673-3678 (1997)
- Crystal structure of GCN4-pIQI, a trimeric coiled coil with buried polar residues. Eckert DM, Malashkevich VN, Kim PS. J Mol Biol 284 859-865 (1998)
- Lack of complex N-glycans on HIV-1 envelope glycoproteins preserves protein conformation and entry function. Eggink D, Melchers M, Wuhrer M, van Montfort T, Dey AK, Naaijkens BA, David KB, Le Douce V, Deelder AM, Kang K, Olson WC, Berkhout B, Hokke CH, Moore JP, Sanders RW. Virology 401 236-247 (2010)
- Structural characterization of the fusion-active complex of severe acute respiratory syndrome (SARS) coronavirus. Ingallinella P, Bianchi E, Finotto M, Cantoni G, Eckert DM, Supekar VM, Bruckmann C, Carfi A, Pessi A. Proc Natl Acad Sci U S A 101 8709-8714 (2004)
- De novo design of fibrils made of short alpha-helical coiled coil peptides. Potekhin SA, Melnik TN, Popov V, Lanina NF, Vazina AA, Rigler P, Verdini AS, Corradin G, Kajava AV. Chem Biol 8 1025-1032 (2001)
- Structural and functional analysis of interhelical interactions in the human immunodeficiency virus type 1 gp41 envelope glycoprotein by alanine-scanning mutagenesis. Lu M, Stoller MO, Wang S, Liu J, Fagan MB, Nunberg JH. J Virol 75 11146-11156 (2001)
- Human immunodeficiency virus type 1 envelope glycoprotein oligomerization requires the gp41 amphipathic alpha-helical/leucine zipper-like sequence. Poumbourios P, Wilson KA, Center RJ, El Ahmar W, Kemp BE. J Virol 71 2041-2049 (1997)
- Crystal structure of tetranectin, a trimeric plasminogen-binding protein with an alpha-helical coiled coil. Nielsen BB, Kastrup JS, Rasmussen H, Holtet TL, Graversen JH, Graversen JH, Etzerodt M, Thøgersen HC, Larsen IK. FEBS Lett 412 388-396 (1997)
- De novo design of a model peptide sequence to examine the effects of single amino acid substitutions in the hydrophobic core on both stability and oligomerization state of coiled-coils. Wagschal K, Tripet B, Hodges RS. J Mol Biol 285 785-803 (1999)
- Assembly of a rod-shaped chimera of a trimeric GCN4 zipper and the HIV-1 gp41 ectodomain expressed in Escherichia coli. Weissenhorn W, Calder LJ, Dessen A, Laue T, Skehel JJ, Wiley DC. Proc Natl Acad Sci U S A 94 6065-6069 (1997)
- Orientation, positional, additivity, and oligomerization-state effects of interhelical ion pairs in alpha-helical coiled-coils. Kohn WD, Kay CM, Hodges RS. J Mol Biol 283 993-1012 (1998)
- Crystal structure of the oligomerization domain of NSP4 from rotavirus reveals a core metal-binding site. Bowman GD, Nodelman IM, Levy O, Lin SL, Tian P, Zamb TJ, Udem SA, Venkataraghavan B, Schutt CE. J Mol Biol 304 861-871 (2000)
- Recombinant adenovirus vectors with knobless fibers for targeted gene transfer. van Beusechem VW, van Rijswijk AL, van Es HH, Haisma HJ, Pinedo HM, Gerritsen WR. Gene Ther 7 1940-1946 (2000)
- Identifying important structural characteristics of arsenic resistance proteins by using designed three-stranded coiled coils. Touw DS, Nordman CE, Stuckey JA, Pecoraro VL. Proc Natl Acad Sci U S A 104 11969-11974 (2007)
- Inhibition of human immunodeficiency virus type 1 infectivity by the gp41 core: role of a conserved hydrophobic cavity in membrane fusion. Ji H, Shu W, Burling FT, Jiang S, Lu M. J Virol 73 8578-8586 (1999)
- Cutting edge: NTB-A activates NK cells via homophilic interaction. Flaig RM, Stark S, Watzl C. J Immunol 172 6524-6527 (2004)
- Assembly and structural properties of glucocorticoid-induced TNF receptor ligand: Implications for function. Chattopadhyay K, Ramagopal UA, Mukhopadhaya A, Malashkevich VN, Dilorenzo TP, Brenowitz M, Nathenson SG, Almo SC. Proc Natl Acad Sci U S A 104 19452-19457 (2007)
- The GM2 glycan serves as a functional coreceptor for serotype 1 reovirus. Reiss K, Stencel JE, Liu Y, Blaum BS, Reiter DM, Feizi T, Dermody TS, Stehle T. PLoS Pathog 8 e1003078 (2012)
- A recipe for designing water-soluble, beta-sheet-forming peptides. Mayo KH, Ilyina E, Park H. Protein Sci 5 1301-1315 (1996)
- Coiled coils at the edge of configurational heterogeneity. Structural analyses of parallel and antiparallel homotetrameric coiled coils reveal configurational sensitivity to a single solvent-exposed amino acid substitution. Yadav MK, Leman LJ, Price DJ, Brooks CL, Stout CD, Ghadiri MR. Biochemistry 45 4463-4473 (2006)
- Soluble CD23 monomers inhibit and oligomers stimulate IGE synthesis in human B cells. McCloskey N, Hunt J, Beavil RL, Jutton MR, Grundy GJ, Girardi E, Fabiane SM, Fear DJ, Conrad DH, Sutton BJ, Gould HJ. J Biol Chem 282 24083-24091 (2007)
- Structure of the coiled-coil dimerization motif of Sir4 and its interaction with Sir3. Chang JF, Hall BE, Tanny JC, Moazed D, Filman D, Ellenberger T. Structure 11 637-649 (2003)
- Recombinant trimeric HA protein immunogenicity of H5N1 avian influenza viruses and their combined use with inactivated or adenovirus vaccines. Lin SC, Huang MH, Tsou PC, Huang LM, Chong P, Wu SC. PLoS One 6 e20052 (2011)
- An autoinhibited coiled-coil design strategy for split-protein protease sensors. Shekhawat SS, Porter JR, Sriprasad A, Ghosh I. J Am Chem Soc 131 15284-15290 (2009)
- Homo-oligomerization of Marburgvirus VP35 is essential for its function in replication and transcription. Möller P, Pariente N, Klenk HD, Becker S. J Virol 79 14876-14886 (2005)
- Self-assembling peptide-polymer hydrogels designed from the coiled coil region of fibrin. Jing P, Rudra JS, Herr AB, Collier JH. Biomacromolecules 9 2438-2446 (2008)
- Structure of the human metapneumovirus fusion protein with neutralizing antibody identifies a pneumovirus antigenic site. Wen X, Krause JC, Leser GP, Cox RG, Lamb RA, Williams JV, Crowe JE, Jardetzky TS. Nat Struct Mol Biol 19 461-463 (2012)
- Generalized Crick equations for modeling noncanonical coiled coils. Offer G, Hicks MR, Woolfson DN. J Struct Biol 137 41-53 (2002)
- Molecular basis of coiled-coil oligomerization-state specificity. Ciani B, Bjelic S, Honnappa S, Jawhari H, Jaussi R, Payapilly A, Jowitt T, Steinmetz MO, Kammerer RA. Proc Natl Acad Sci U S A 107 19850-19855 (2010)
- NMR solution structure of a highly stable de novo heterodimeric coiled-coil. Lindhout DA, Litowski JR, Mercier P, Hodges RS, Sykes BD. Biopolymers 75 367-375 (2004)
- FADD self-association is required for stable interaction with an activated death receptor. Sandu C, Morisawa G, Wegorzewska I, Huang T, Arechiga AF, Hill JM, Kim T, Walsh CM, Werner MH. Cell Death Differ 13 2052-2061 (2006)
- Structures of class A macrophage scavenger receptors. Electron microscopic study of flexible, multidomain, fibrous proteins and determination of the disulfide bond pattern of the scavenger receptor cysteine-rich domain. Resnick D, Chatterton JE, Schwartz K, Slayter H, Krieger M. J Biol Chem 271 26924-26930 (1996)
- Crystal Structure of the Pre-fusion Nipah Virus Fusion Glycoprotein Reveals a Novel Hexamer-of-Trimers Assembly. Xu K, Chan YP, Bradel-Tretheway B, Akyol-Ataman Z, Zhu Y, Dutta S, Yan L, Feng Y, Wang LF, Skiniotis G, Lee B, Zhou ZH, Broder CC, Aguilar HC, Nikolov DB. PLoS Pathog 11 e1005322 (2015)
- A triple-arginine motif in the amino-terminal domain and oligomerization are required for HIV-1 inhibition by human MX2. Goujon C, Greenbury RA, Papaioannou S, Doyle T, Malim MH. J Virol 89 4676-4680 (2015)
- Structures and polymorphic interactions of two heptad-repeat regions of the SARS virus S2 protein. Deng Y, Liu J, Zheng Q, Yong W, Lu M. Structure 14 889-899 (2006)
- D(n)-symmetrical tertiary templates for the design of tubular proteins. North B, Summa CM, Ghirlanda G, DeGrado WF. J Mol Biol 311 1081-1090 (2001)
- Atomic structure of a tryptophan-zipper pentamer. Liu J, Yong W, Deng Y, Kallenbach NR, Lu M. Proc Natl Acad Sci U S A 101 16156-16161 (2004)
- The secretable form of trimeric TRAIL, a potent inducer of apoptosis. Kim MH, Billiar TR, Seol DW. Biochem Biophys Res Commun 321 930-935 (2004)
- An active role for a structured B-linker in effector control of the sigma54-dependent regulator DmpR. O'Neill E, Wikström P, Shingler V. EMBO J 20 819-827 (2001)
- Crystal structure of the amino-terminal coiled-coil domain of the APC tumor suppressor. Day CL, Alber T. J Mol Biol 301 147-156 (2000)
- Regression of human mammary adenocarcinoma by systemic administration of a recombinant gene encoding the hFlex-TRAIL fusion protein. Wu X, He Y, Falo LD, Hui KM, Huang L. Mol Ther 3 368-374 (2001)
- The amino terminal regions of proBNP and proANP oligomerise through leucine zipper-like coiled-coil motifs. Seidler T, Pemberton C, Yandle T, Espiner E, Nicholls G, Richards M. Biochem Biophys Res Commun 255 495-501 (1999)
- Biochemical, conformational, and immunogenic analysis of soluble trimeric forms of henipavirus fusion glycoproteins. Chan YP, Lu M, Dutta S, Yan L, Barr J, Flora M, Feng YR, Xu K, Nikolov DB, Wang LF, Skiniotis G, Broder CC. J Virol 86 11457-11471 (2012)
- Crystal structure of the Marburg virus GP2 core domain in its postfusion conformation. Koellhoffer JF, Malashkevich VN, Harrison JS, Toro R, Bhosle RC, Chandran K, Almo SC, Lai JR. Biochemistry 51 7665-7675 (2012)
- Coiled-coil assembly by peptides with non-heptad sequence motifs. Hicks MR, Holberton DV, Kowalczyk C, Woolfson DN. Fold Des 2 149-158 (1997)
- Crystal structure of a designed, thermostable, heterotrimeric coiled coil. Nautiyal S, Alber T. Protein Sci 8 84-90 (1999)
- Evaluation of the energetic contribution of interhelical Coulombic interactions for coiled coil helix orientation specificity. McClain DL, Binfet JP, Oakley MG. J Mol Biol 313 371-383 (2001)
- A leucine zipper motif determines different functions in a DNA replication protein. Garcia de Viedma D, Giraldo R, Rivas G, Fernández-Tresguerres E, Diaz-Orejas R. EMBO J 15 925-934 (1996)
- A single amino acid can switch the oligomerization state of the alpha-helical coiled-coil domain of cartilage matrix protein. Beck K, Gambee JE, Kamawal A, Bächinger HP. EMBO J 16 3767-3777 (1997)
- CCBuilder 2.0: Powerful and accessible coiled-coil modeling. Wood CW, Woolfson DN. Protein Sci 27 103-111 (2018)
- Extensive mutagenesis of the HSV-1 gB ectodomain reveals remarkable stability of its postfusion form. Vitu E, Sharma S, Stampfer SD, Heldwein EE. J Mol Biol 425 2056-2071 (2013)
- Heteronuclear NMR assignments and secondary structure of the coiled coil trimerization domain from cartilage matrix protein in oxidized and reduced forms. Wiltscheck R, Kammerer RA, Dames SA, Schulthess T, Blommers MJ, Engel J, Alexandrescu AT. Protein Sci 6 1734-1745 (1997)
- Domain organization, folding and stability of bacteriophage T4 fibritin, a segmented coiled-coil protein. Boudko SP, Londer YY, Letarov AV, Sernova NV, Engel J, Mesyanzhinov VV. Eur J Biochem 269 833-841 (2002)
- X-ray structure of a maquette scaffold. Huang SS, Gibney BR, Stayrook SE, Leslie Dutton P, Lewis M. J Mol Biol 326 1219-1225 (2003)
- Gating of the designed trimeric/tetrameric voltage-gated H+ channel. Fujiwara Y, Kurokawa T, Takeshita K, Nakagawa A, Larsson HP, Okamura Y. J Physiol 591 627-640 (2013)
- A specific sequence of the laminin alpha 2 chain critical for the initiation of heterotrimer assembly. Utani A, Nomizu M, Sugiyama S, Miyamoto S, Roller PP, Yamada Y. J Biol Chem 270 3292-3298 (1995)
- Artificial Diiron Enzymes with a De Novo Designed Four-Helix Bundle Structure. Chino M, Maglio O, Nastri F, Pavone V, DeGrado WF, Lombardi A. Eur J Inorg Chem 2015 3371-3390 (2015)
- Characterization of EBV gB indicates properties of both class I and class II viral fusion proteins. Backovic M, Leser GP, Lamb RA, Longnecker R, Jardetzky TS. Virology 368 102-113 (2007)
- De novo design of a two-stranded coiled-coil switch peptide. Kammerer RA, Steinmetz MO. J Struct Biol 155 146-153 (2006)
- Importance of potential interhelical salt-bridges involving interior residues for coiled-coil stability and quaternary structure. McClain DL, Gurnon DG, Oakley MG. J Mol Biol 324 257-270 (2002)
- Nanoparticle-induced folding and fibril formation of coiled-coil-based model peptides. Wagner SC, Roskamp M, Pallerla M, Araghi RR, Schlecht S, Koksch B. Small 6 1321-1328 (2010)
- Structure of the bacterial cell division determinant GpsB and its interaction with penicillin-binding proteins. Rismondo J, Cleverley RM, Lane HV, Großhennig S, Steglich A, Möller L, Mannala GK, Hain T, Lewis RJ, Halbedel S. Mol Microbiol 99 978-998 (2016)
- The native GCN4 leucine-zipper domain does not uniquely specify a dimeric oligomerization state. Oshaben KM, Salari R, McCaslin DR, Chong LT, Horne WS. Biochemistry 51 9581-9591 (2012)
- Genetic selection of short peptides that support protein oligomerization in vivo. Zhang Z, Murphy A, Hu JC, Kodadek T. Curr Biol 9 417-420 (1999)
- Modeling effects of mutations in coiled-coil structures: case study using epidermolysis bullosa simplex mutations in segment 1a of K5/K14 intermediate filaments. Smith TA, Steinert PM, Parry DA. Proteins 55 1043-1052 (2004)
- Chirality of coiled coils: elasticity matters. Neukirch S, Goriely A, Hausrath AC. Phys Rev Lett 100 038105 (2008)
- Domains of Rinderpest virus phosphoprotein involved in interaction with itself and the nucleocapsid protein. Shaji D, Shaila MS. Virology 258 415-424 (1999)
- A novel coiled-coil repeat variant in a class of bacterial cytoskeletal proteins. Walshaw J, Gillespie MD, Kelemen GH. J Struct Biol 170 202-215 (2010)
- Cytotoxicity of Tumor necrosis factor related apoptosis-inducing ligand towards Ewing's sarcoma cell lines. Kumar A, Jasmin A, Eby MT, Chaudhary PM. Oncogene 20 1010-1014 (2001)
- Dimer-to-tetramer transformation: loop excision dramatically alters structure and stability of the ROP four alpha-helix bundle protein. Lassalle MW, Hinz HJ, Wenzel H, Vlassi M, Kokkinidis M, Cesareni G. J Mol Biol 279 987-1000 (1998)
- The GCN4 leucine zipper can functionally substitute for the heat shock transcription factor's trimerization domain. Drees BL, Grotkopp EK, Nelson HC. J Mol Biol 273 61-74 (1997)
- Variable sensitivity to substitutions in the N-terminal heptad repeat of Mason-Pfizer monkey virus transmembrane protein. Song C, Hunter E. J Virol 77 7779-7785 (2003)
- A stabilized HIV-1 envelope glycoprotein trimer fused to CD40 ligand targets and activates dendritic cells. Melchers M, Matthews K, de Vries RP, Eggink D, van Montfort T, Bontjer I, van de Sandt C, David K, Berkhout B, Moore JP, Sanders RW. Retrovirology 8 48 (2011)
- The role of the carboxyl terminal alpha-helical coiled-coil domain in osmosensing by transporter ProP of Escherichia coli. Culham DE, Tripet B, Racher KI, Voegele RT, Hodges RS, Wood JM. J Mol Recognit 13 309-322 (2000)
- Twist in chiral interaction between biological helices. Kornyshev AA, Leikin S. Phys Rev Lett 84 2537-2540 (2000)
- A beta/gamma motif to mimic alpha-helical turns in proteins. Rezaei Araghi R, Jäckel C, Cölfen H, Salwiczek M, Völkel A, Wagner SC, Wieczorek S, Baldauf C, Koksch B. Chembiochem 11 335-339 (2010)
- Cloning of novel kinectin splice variants with alternative C-termini: structure, distribution and evolution of mouse kinectin. Leung E, Print CG, Parry DA, Closey DN, Lockhart PJ, Skinner SJ, Batchelor DC, Krissansen GW. Immunol Cell Biol 74 421-433 (1996)
- Conformational transition between four and five-stranded phenylalanine zippers determined by a local packing interaction. Liu J, Zheng Q, Deng Y, Kallenbach NR, Lu M. J Mol Biol 361 168-179 (2006)
- Crystal structure of a trimeric form of the K(V)7.1 (KCNQ1) A-domain tail coiled-coil reveals structural plasticity and context dependent changes in a putative coiled-coil trimerization motif. Xu Q, Minor DL. Protein Sci 18 2100-2114 (2009)
- Design of an EGFR-targeting toxin for photochemical delivery: in vitro and in vivo selectivity and efficacy. Berstad MB, Cheung LH, Berg K, Peng Q, Fremstedal AS, Patzke S, Rosenblum MG, Weyergang A. Oncogene 34 5582-5592 (2015)
- Effect of dimerizing domains and basic residues on in vitro and in vivo assembly of Mason-Pfizer monkey virus and human immunodeficiency virus. Bohmová K, Hadravová R, Stokrová J, Tuma R, Ruml T, Pichová I, Rumlová M. J Virol 84 1977-1988 (2010)
- Necessity of the stalk region for immunoglobulin E interaction with CD23. Chen BH, Ma C, Caven TH, Chan-Li Y, Beavil A, Beavil R, Gould H, Conrad DH. Immunology 107 373-381 (2002)
- Rational design of peptide-based building blocks for nanoscience and synthetic biology. Armstrong CT, Boyle AL, Bromley EH, Mahmoud ZN, Smith L, Thomson AR, Woolfson DN. Faraday Discuss 143 305-17; discussion 359-72 (2009)
- Characterization of leucine zipper complexes by electrospray ionization mass spectrometry. Wendt H, Dürr E, Thomas RM, Przybylski M, Bosshard HR. Protein Sci 4 1563-1570 (1995)
- Evidence for structural constraint on ovulin, a rapidly evolving Drosophila melanogaster seminal protein. Wong A, Albright SN, Wolfner MF. Proc Natl Acad Sci U S A 103 18644-18649 (2006)
- Soluble TRAIL Armed Human MSC As Gene Therapy For Pancreatic Cancer. Spano C, Grisendi G, Golinelli G, Rossignoli F, Prapa M, Bestagno M, Candini O, Petrachi T, Recchia A, Miselli F, Rovesti G, Orsi G, Maiorana A, Manni P, Veronesi E, Piccinno MS, Murgia A, Pinelli M, Horwitz EM, Cascinu S, Conte P, Dominici M. Sci Rep 9 1788 (2019)
- Synthetic Control of Tertiary Helical Structures in Short Peptides. Wuo MG, Hong SH, Singh A, Arora PS. J Am Chem Soc 140 16284-16290 (2018)
- Vascular Ehlers-Danlos syndrome mutations in type III collagen differently stall the triple helical folding. Mizuno K, Boudko S, Engel J, Bächinger HP. J Biol Chem 288 19166-19176 (2013)
- De novo design of heterotrimeric coiled coils. Lombardi A, Bryson JW, DeGrado WF. Biopolymers 40 495-504 (1996)
- Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Hunt AC, Case JB, Park YJ, Cao L, Wu K, Walls AC, Liu Z, Bowen JE, Yeh HW, Saini S, Helms L, Zhao YT, Hsiang TY, Starr TN, Goreshnik I, Kozodoy L, Carter L, Ravichandran R, Green LB, Matochko WL, Thomson CA, Vögeli B, Krüger A, VanBlargan LA, Chen RE, Ying B, Bailey AL, Kafai NM, Boyken SE, Ljubetič A, Edman N, Ueda G, Chow CM, Johnson M, Addetia A, Navarro MJ, Panpradist N, Gale M, Freedman BS, Bloom JD, Ruohola-Baker H, Whelan SPJ, Stewart L, Diamond MS, Veesler D, Jewett MC, Baker D. Sci Transl Med 14 eabn1252 (2022)
- Preparation of recombinant viral glycoproteins for novel and therapeutic antibody discovery. Chan YP, Yan L, Feng YR, Broder CC. Methods Mol Biol 525 31-58, xiii (2009)
- Reversible and fast association equilibria of a molecular chaperone, gp57A, of bacteriophage T4. Ali SA, Iwabuchi N, Matsui T, Hirota K, Kidokoro S, Arai M, Kuwajima K, Schuck P, Arisaka F. Biophys J 85 2606-2618 (2003)
- Stereoselection in designed three-helix bundle metalloproteins. Case MA, Ghadiri MR, Mutz MW, McLendon GL. Chirality 10 35-40 (1998)
- Targeting antibody responses to the membrane proximal external region of the envelope glycoprotein of human immunodeficiency virus. Kamdem Toukam D, Tenbusch M, Stang A, Temchura V, Storcksdieck Genannt Bonsmann M, Grewe B, Koch S, Meyerhans A, Nchinda G, Kaptue L, Uberla K. PLoS One 7 e38068 (2012)
- The use of trimeric isoleucine-zipper fusion proteins to study surface-receptor-ligand interactions in natural killer cells. Stark S, Flaig RM, Sandusky M, Watzl C. J Immunol Methods 296 149-158 (2005)
- Adeno-associated virus-mediated gene transfer of a secreted form of TRAIL inhibits tumor growth and occurrence in an experimental tumor model. Yoo J, Choi S, Hwang KS, Cho WK, Jung CR, Kwon ST, Im DS. J Gene Med 8 163-174 (2006)
- Computer-Aided Approaches for Targeting HIVgp41. Allen WJ, Rizzo RC. Biology (Basel) 1 311-338 (2012)
- Sequence-based design of a peptide probe for the APC tumor suppressor protein. Sharma VA, Logan J, King DS, White R, Alber T. Curr Biol 8 823-830 (1998)
- Mcm10 self-association is mediated by an N-terminal coiled-coil domain. Du W, Josephrajan A, Adhikary S, Bowles T, Bielinsky AK, Eichman BF. PLoS One 8 e70518 (2013)
- Structural characterization of the glycoprotein GP2 core domain from the CAS virus, a novel arenavirus-like species. Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, S Harrison J, Chandran K, DeRisi JL, Almo SC, Lai JR. J Mol Biol 426 1452-1468 (2014)
- Structure of a designed, right-handed coiled-coil tetramer containing all biological amino acids. Sales M, Plecs JJ, Holton JM, Alber T. Protein Sci 16 2224-2232 (2007)
- Functional and mechanistic analyses of biomimetic aminoacyl transfer reactions in de novo designed coiled coil peptides via rational active site engineering. Leman LJ, Weinberger DA, Huang ZZ, Wilcoxen KM, Ghadiri MR. J Am Chem Soc 129 2959-2966 (2007)
- Mapping of conformational B cell epitopes within alpha-helical coiled coil proteins. Cooper JA, Hayman W, Reed C, Kagawa H, Good MF, Saul A. Mol Immunol 34 433-440 (1997)
- Structure of Serotype 1 Reovirus Attachment Protein σ1 in Complex with Junctional Adhesion Molecule A Reveals a Conserved Serotype-Independent Binding Epitope. Stettner E, Dietrich MH, Reiss K, Dermody TS, Stehle T. J Virol 89 6136-6140 (2015)
- An engineered leucine zipper a position mutant with an unusual three-state unfolding pathway. Zhu H, Celinski SA, Scholtz JM, Hu JC. Protein Sci 10 24-33 (2001)
- Biophysical characterization of a soluble CD40 ligand (CD154) coiled-coil trimer: evidence of a reversible acid-denatured molten globule. Matsuura JE, Morris AE, Ketchem RR, Braswell EH, Klinke R, Gombotz WR, Remmele RL. Arch Biochem Biophys 392 208-218 (2001)
- Effect of chain length on coiled-coil stability: decreasing stability with increasing chain length. Kwok SC, Hodges RS. Biopolymers 76 378-390 (2004)
- Modeling of a five-stranded coiled coil structure for the assembly domain of the cartilage oligomeric matrix protein. Kajava AV. Proteins 24 218-226 (1996)
- Structural test of the parameterized-backbone method for protein design. Plecs JJ, Harbury PB, Kim PS, Alber T. J Mol Biol 342 289-297 (2004)
- Synthesis, physicochemical characterization, and crystallization of a putative retro-coiled coil. Liu N, Deillon C, Klauser S, Gutte B, Thomas RM. Protein Sci 7 1214-1220 (1998)
- X-ray structure of a water-soluble analog of the membrane protein phospholamban: sequence determinants defining the topology of tetrameric and pentameric coiled coils. Slovic AM, Stayrook SE, North B, Degrado WF. J Mol Biol 348 777-787 (2005)
- A network of coiled-coil associations derived from synthetic GCN4 leucine-zipper arrays. Portwich M, Keller S, Strauss HM, Mahrenholz CC, Kretzschmar I, Kramer A, Volkmer R. Angew Chem Int Ed Engl 46 1654-1657 (2007)
- Automated Analysis of Single-Molecule Photobleaching Data by Statistical Modeling of Spot Populations. Liesche C, Grussmayer KS, Ludwig M, Wörz S, Rohr K, Herten DP, Beaudouin J, Eils R. Biophys J 109 2352-2362 (2015)
- Crystal structure of the leucine zipper domain of small-conductance Ca2+-activated K+ (SK(Ca)) channel from Rattus norvegicus. Kim JY, Kim MK, Kang GB, Park CS, Eom SH. Proteins 70 568-571 (2008)
- Effect of mobile phase on the oligomerization state of alpha-helical coiled-coil peptides during high-performance size-exclusion chromatography. Mant CT, Chao H, Hodges RS. J Chromatogr A 791 85-98 (1997)
- Polyionic fusion peptides function as specific dimerization motifs. Richter SA, Stubenrauch K, Lilie H, Rudolph R. Protein Eng 14 775-783 (2001)
- Single Amino Acid Substitutions at Specific Positions of the Heptad Repeat Sequence of Piscidin-1 Yielded Novel Analogs That Show Low Cytotoxicity and In Vitro and In Vivo Antiendotoxin Activity. Kumar A, Kumar A, Tripathi AK, Kathuria M, Shree S, Tripathi JK, Purshottam RK, Ramachandran R, Mitra K, Ghosh JK. Antimicrob Agents Chemother 60 3687-3699 (2016)
- Synergistic interactions between aqueous and membrane domains of a designed protein determine its fold and stability. Cristian L, Nanda V, Lear JD, DeGrado WF. J Mol Biol 348 1225-1233 (2005)
- Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers. Giesecke AV, Fang R, Joung JK. Mol Syst Biol 2 2006.2011 (2006)
- Your personalized protein structure: Andrei N. Lupas fused to GCN4 adaptors. Deiss S, Hernandez Alvarez B, Bär K, Ewers CP, Coles M, Albrecht R, Hartmann MD. J Struct Biol 186 380-385 (2014)
- A novel, multilayer structure of a helical peptide. Taylor KS, Lou MZ, Chin TM, Yang NC, Garavito RM. Protein Sci 5 414-421 (1996)
- Hendra virus fusion protein transmembrane domain contributes to pre-fusion protein stability. Webb S, Nagy T, Moseley H, Fried M, Dutch R. J Biol Chem 292 5685-5694 (2017)
- ISAMBARD: an open-source computational environment for biomolecular analysis, modelling and design. Wood CW, Heal JW, Thomson AR, Bartlett GJ, Ibarra AÁ, Brady RL, Sessions RB, Woolfson DN. Bioinformatics 33 3043-3050 (2017)
- Optimization of HIV-1 Envelope DNA Vaccine Candidates within Three Different Animal Models, Guinea Pigs, Rabbits and Cynomolgus Macaques. Borggren M, Vinner L, Andresen BS, Grevstad B, Repits J, Melchers M, Elvang TL, Sanders RW, Martinon F, Dereuddre-Bosquet N, Bowles EJ, Stewart-Jones G, Biswas P, Scarlatti G, Jansson M, Heyndrickx L, Grand RL, Fomsgaard A. Vaccines (Basel) 1 305-327 (2013)
- The effect of the side chain length of Asp and Glu on coordination structure of Cu(2+) in a de novo designed protein. Shiga D, Nakane D, Inomata T, Masuda H, Oda M, Noda M, Uchiyama S, Fukui K, Takano Y, Nakamura H, Mizuno T, Tanaka T. Biopolymers 91 907-916 (2009)
- Three-dimensional modelling of interchain sequence similarities and differences in the coiled-coil segments of keratin intermediate filament heterodimers highlight features important in assembly. Smith TA, Parry DA. J Struct Biol 162 139-151 (2008)
- Cell-cell and virus-cell fusion assay-based analyses of alanine insertion mutants in the distal α9 portion of the JRFL gp41 subunit from HIV-1. Yamamoto M, Du Q, Song J, Wang H, Watanabe A, Tanaka Y, Kawaguchi Y, Inoue JI, Matsuda Z. J Biol Chem 294 5677-5687 (2019)
- Design and synthesis of 3alpha-helix peptides forming a cavity for a fluorescent ligand. Obataya I, Sakamoto S, Ueno A, Mihara H. Biopolymers 59 65-71 (2001)
- Solution assembly of the pseudo-high affinity and intermediate affinity interleukin-2 receptor complexes. Wu Z, Goldstein B, Laue TM, Liparoto SF, Nemeth MJ, Ciardelli TL. Protein Sci 8 482-489 (1999)
- A leucine zipper protein of mitochondrial origin. Le TH, Blair D, McManus DP. Biochim Biophys Acta 1546 435-443 (2001)
- A single-shot adenoviral vaccine provides hemagglutinin stalk-mediated protection against heterosubtypic influenza challenge in mice. Bliss CM, Freyn AW, Caniels TG, Leyva-Grado VH, Nachbagauer R, Sun W, Tan GS, Gillespie VL, McMahon M, Krammer F, Hill AVS, Palese P, Coughlan L. Mol Ther 30 2024-2047 (2022)
- Effects of core-packing on the structure, function, and mechanics of a four-helix-bundle protein ROP. Ceruso MA, Grottesi A, Di Nola A. Proteins 36 436-446 (1999)
- Solution structure of the coiled-coil trimerization domain from lung surfactant protein D. Kovacs H, O'Ddonoghue SI, Hoppe HJ, Comfort D, Reid KB, Campbell lD, Nilges M. J Biomol NMR 24 89-102 (2002)
- TNF receptor-1 (TNF-R1) ubiquitous scaffolding and signaling protein interacts with TNF-R1 and TRAF2 via an N-terminal docking interface. Terry Powers JL, Mace KE, Parfrey H, Lee SJ, Zhang G, Riches DW. Biochemistry 49 7821-7829 (2010)
- Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state. Wang Y, Kaur P, Sun ZJ, Elbahnasawy MA, Hayati Z, Qiao ZS, Bui NN, Chile C, Nasr ML, Wagner G, Wang JH, Song L, Reinherz EL, Kim M. Proc Natl Acad Sci U S A 116 22556-22566 (2019)
- Towards understanding secondary structure transitions: phosphorylation and metal coordination in model peptides. Broncel M, Wagner SC, Paul K, Hackenberger CP, Koksch B. Org Biomol Chem 8 2575-2579 (2010)
- An isoleucine-zipper motif enhances costimulation of human soluble trimeric GITR ligand. Cui D, Wang S, Chen Y, Tong J, Ma J, Tang L, Yang X, Shi Y, Tian J, Lu L, Xu H. Cell Mol Immunol 7 316-322 (2010)
- Cloning and characterization of a GC-box binding protein, G10BP-1, responsible for repression of the rat fibronectin gene. Oda E, Shirasuna K, Suzuki M, Nakano K, Nakajima T, Oda K. Mol Cell Biol 18 4772-4782 (1998)
- Improving the interaction of Myc-interfering peptides with Myc using molecular dynamics simulations. Jouaux EM, Timm BB, Arndt KM, Exner TE. J Pept Sci 15 5-15 (2009)
- The Transmembrane Conformation of the Influenza B Virus M2 Protein in Lipid Bilayers. Mandala VS, Liao SY, Gelenter MD, Hong M. Sci Rep 9 3725 (2019)
- An implementation of hydrophobic force in implicit solvent molecular dynamics simulation for packed proteins. Duan LL, Zhu T, Mei Y, Zhang QG, Tang B, Zhang JZ. J Mol Model 19 2605-2612 (2013)
- Crystal structure of a self-assembling lipopeptide detergent at 1.20 A. Ho DN, Pomroy NC, Cuesta-Seijo JA, Privé GG. Proc Natl Acad Sci U S A 105 12861-12866 (2008)
- Fundamental processes of protein folding: measuring the energetic balance between helix formation and hydrophobic interactions. Xian W, Connolly PJ, Oslin M, Hausrath AC, Osterhout JJ. Protein Sci 15 2062-2070 (2006)
- High thermal stability imparted by a designed tandem Arg-Trp stretch in an alpha-helical coiled coil. Sakurai Y, Mizuno T, Hiroaki H, Gohda K, Oku J, Tanaka T. Angew Chem Int Ed Engl 44 6180-6183 (2005)
- Restraint-driven formation of alpha-helical coiled coils in molecular dynamics simulations. Yang PK, Tzou WS, Hwang MJ. Biopolymers 50 667-677 (1999)
- Structural cassette mutagenesis in a de novo designed protein: proof of a novel concept for examining protein folding and stability. Kwok SC, Tripet B, Man JH, Chana MS, Lavigne P, Mant CT, Hodges RS. Biopolymers 47 101-123 (1998)
- Bent Into Shape: Folded Peptides to Mimic Protein Structure and Modulate Protein Function. Merritt HI, Sawyer N, Arora PS. Pept Sci (Hoboken) 112 (2020)
- Enhancement of binding activity of soluble human CD40 to CD40 ligand through incorporation of an isoleucine zipper motif. He XH, Xu LH, Liu Y. Acta Pharmacol Sin 27 333-338 (2006)
- Lipopeptides derived from HIV and SIV mimicking the prehairpin intermediate of gp41 on solid supported lipid bilayers. Schuy S, Schäfer E, Yoder NC, Kumar K, Vogel R, Janshoff A. J Struct Biol 168 125-136 (2009)
- Recombinant expression, purification, and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Gong Z, Kessans SA, Song L, Dörner K, Lee HH, Meador LR, LaBaer J, Hogue BG, Mor TS, Fromme P. Protein Sci 23 1607-1618 (2014)
- Refolding studies on the tetrameric loop deletion mutant RM6 of ROP protein. Lassalle MW, Hinz HJ. Biol Chem 380 459-472 (1999)
- Stabilization of the fibrous structure of an alpha-helix-forming peptide by sequence reversal. Kojima S, Kuriki Y, Yazaki K, Miura K. Biochem Biophys Res Commun 331 577-582 (2005)
- Trimeric coiled coils expand the range of strength, toughness and dynamics of coiled coil motifs under shear. Bergues-Pupo AE, Blank KG, Lipowsky R, Vila Verde A. Phys Chem Chem Phys 20 29105-29115 (2018)
- β-Catenin-related protein WRM-1 is a multifunctional regulatory subunit of the LIT-1 MAPK complex. Yang XD, Karhadkar TR, Medina J, Robertson SM, Lin R. Proc Natl Acad Sci U S A 112 E137-46 (2015)
- Coiled-coil lipopeptides mimicking the prehairpin intermediate of glycoprotein gp41. Schuy S, Schäfer E, Yoder NC, Hobe S, Kumar K, Vogel R, Janshoff A. Angew Chem Int Ed Engl 48 751-754 (2009)
- Crystal structure of a super leucine zipper, an extended two-stranded super long coiled coil. Diao J. Protein Sci 19 319-326 (2010)
- Differential self assembly of amphiphilic helical peptides. Lutgring R, Lipton M, Chmielewski J. Amino Acids 10 295-304 (1996)
- Lead(II) Binding in Natural and Artificial Proteins. Cangelosi V, Ruckthong L, Pecoraro VL. Met Ions Life Sci 17 (2017)
- Accommodating discontinuities in dimeric left-handed coiled coils in ATP synthase external stalks. Wise JG, Vogel PD. Biophys J 96 2823-2831 (2009)
- Activation of OX40 and CD27 Costimulatory Signalling in Sheep through Recombinant Ovine Ligands. Rojas JM, Alejo A, Avia JM, Rodríguez-Martín D, Sánchez C, Alcamí A, Sevilla N, Martín V. Vaccines (Basel) 8 (2020)
- Antibody engineering of a cytotoxic monoclonal antibody 84 against human embryonic stem cells: Investigating the effects of multivalency on cytotoxicity. Klement M, Zheng J, Liu C, Tan HL, Wong VV, Choo AB, Lee DY, Ow DS. J Biotechnol 243 29-37 (2017)
- Concentration-Dependent Structural Transition of the HIV-1 gp41 MPER Peptide into α-Helical Trimers. Chiliveri SC, Louis JM, Bax A. Angew Chem Int Ed Engl 60 166-170 (2021)
- Determining the Stoichiometry of Small Protein Oligomers Using Steady-State Fluorescence Anisotropy. Heckmeier PJ, Agam G, Teese MG, Hoyer M, Stehle R, Lamb DC, Langosch D. Biophys J 119 99-114 (2020)
- Mechanism of receptor assembly via the pleiotropic adipokine Leptin. Tsirigotaki A, Dansercoer A, Verschueren KHG, Marković I, Pollmann C, Hafer M, Felix J, Birck C, Van Putte W, Catteeuw D, Tavernier J, Fernando Bazan J, Piehler J, Savvides SN, Verstraete K. Nat Struct Mol Biol 30 551-563 (2023)
- Trimeric receptor-binding domain of SARS-CoV-2 acts as a potent inhibitor of ACE2 receptor-mediated viral entry. Basavarajappa SC, Liu AR, Bruchez A, Li Z, Suzart VG, Liu Z, Chen Y, Xiao TS, Buck M, Ramakrishnan P. iScience 25 104716 (2022)
- A novel BICD2 mutation of a patient with Spinal Muscular Atrophy Lower Extremity Predominant 2. Tumurkhuu M, Batbuyan U, Yuzawa S, Munkhsaikhan Y, Batmunkh G, Nishimura W. Intractable Rare Dis Res 10 102-108 (2021)
- Bidirectional protein-protein interactions control liquid-liquid phase separation of PSD-95 and its interaction partners. Christensen NR, Pedersen CP, Sereikaite V, Pedersen JN, Vistrup-Parry M, Sørensen AT, Otzen D, Teilum K, Madsen KL, Strømgaard K. iScience 25 103808 (2022)
- Initiation of HIV-1 Gag lattice assembly is required for recognition of the viral genome packaging signal. Lei X, Gonçalves-Carneiro D, Zang TM, Bieniasz PD. Elife 12 e83548 (2023)
- Selective targeting and clustering of phosphatidylserine lipids by RSV M protein is critical for virus particle production. Swain J, Bierre M, Veyrié L, Richard CA, Eleouet JF, Muriaux D, Bajorek M. J Biol Chem 299 105323 (2023)
- Structural basis for the oligomerization-state switch from a dimer to a trimer of an engineered cortexillin-1 coiled-coil variant. Bjelić S, Wieser M, Frey D, Stirnimann CU, Chance MR, Jaussi R, Steinmetz MO, Kammerer RA. PLoS One 8 e63370 (2013)
- Supramolecular Assembly of His-Tagged Fluorescent Protein Guests within Coiled-Coil Peptide Crystal Hosts: Three-Dimensional Ordering and Protein Thermal Stability. Curtis RW, Scrudders KL, Ulcickas JRW, Simpson GJ, Low-Nam ST, Chmielewski J. ACS Biomater Sci Eng 8 1860-1866 (2022)
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- X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.. O'Shea EK, Klemm JD, Kim PS, Alber T Science 254 539-44 (1991)
- Evidence that the Leucine Zipper is a Coiled Coil. Shea EK, Rutkowski R, Kim PS Science 243 538- (1989)