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- DNA conformations and their sequence preferences. Svozil D, Kalina J, Omelka M, Schneider B. Nucleic Acids Res. 36 3690-3706 (2008)
- Advanced techniques for constrained internal coordinate molecular dynamics. Wagner JR, Balaraman GS, Niesen MJ, Larsen AB, Jain A, Vaidehi N. J Comput Chem 34 904-914 (2013)