› 1dxn

Solution NMR

The Solution Structure of [d(CGC)r(aaa)d(TTTGCG)]2: Hybrid Junctions Flanked by DNA Duplexes

Released:
DOI: 10.2210/pdb1dxn/pdb
PDB entry 1dxn coloured by chain, ensemble of 10 models, front view.
PDB entry 1dxn coloured by chain, ensemble of 10 models, side view.
PDB entry 1dxn coloured by chain, ensemble of 10 models, top view.
Source organism: Synthetic construct
Primary publication:
Hydration of [d(CGC)r(aaa)d(TTTGCG)](2).
Hsu ST, Chou MT, Chou SH, Huang WC, Cheng JW
J Mol Biol 295 1129-37 (2000)
PMID: 10653692

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113064 (preferred)
Entry contents:
1 distinct DNA/RNA hybrid molecule
Macromolecule:
DNA/RNA (5'-D(*CP*GP*CP)-R(*AP*AP*AP)-D(*TP*TP*TP*GP*CP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.71 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 29%
Refinement method: SA, MD, MATRIX RELAXATION REFINEMENT
Expression system: Not provided

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Citations

3 citation in other articles

Solution structure of the Dickerson DNA dodecamer containing a single ribonucleotide.
DeRose et al. (2012)
2 more

1 mention without citation

QRNAS: software tool for refinement of nucleic acid structures.
Stasiewicz et al. (2019)