› 1dwl

Hybrid

The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation

Released:
DOI: 10.2210/pdb1dwl/pdb
PDB entry 1dwl coloured by chain, ensemble of 3 models, front view.
PDB entry 1dwl coloured by chain, ensemble of 3 models, side view.
PDB entry 1dwl coloured by chain, ensemble of 3 models, top view.
Source organisms:
Primary publication:
Heteronuclear NMR and soft docking: an experimental approach for a structural model of the cytochrome c553-ferredoxin complex.
Morelli X, Dolla A, Czjzek M, Palma PN, Blasco F, Krippahl L, Moura JJ, Guerlesquin F
Biochemistry 39 2530-7 (2000)
PMID: 10704202

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137323 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Ferredoxin-1 Chain: A
Molecule details ›
Chain: A
Length: 59 amino acids
Theoretical weight: 6.26 KDa
Source organism: Desulfomicrobium norvegicum
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P07485 (Residues: 1-59; Coverage: 100%)
Sequence domains: 4Fe-4S binding domain
Cytochrome c-553 Chain: B
Molecule details ›
Chain: B
Length: 79 amino acids
Theoretical weight: 8.32 KDa
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
UniProt:
  • Canonical: P04032 (Residues: 25-103; Coverage: 100%)
Gene names: DVU_1817, cyf
Sequence domains: Cytochrome c

Ligands and Environments

2 bound ligands:
Ligand SF4 1 x SF4
Ligand HEC 1 x HEC
No modified residues

Experiments and Validation Details

Experimental Method: Solution NMR, Theoretical Model
Expression system: Escherichia coli BL21

Quick links

Citations

4 review citations

Using chemical shift perturbation to characterise ligand binding.
Williamson MP. (2013)
3 more

2 mentions without citation

Biological insights from topology independent comparison of protein 3D structures.
Nguyen et al. (2011)
1 more