› 1dvl

X-ray diffraction
2.4Å resolution

CRYSTAL STRUCTURE OF THE 1:1 NETROPSIN-DECAMER D(CCIICICCII)2 COMPLEX WITH ONLY ONE DRUG BOUND AT ONE END

Released:
DOI: 10.2210/pdb1dvl/pdb
PDB entry 1dvl coloured by chain, front view.
PDB entry 1dvl coloured by chain, side view.
PDB entry 1dvl coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of the 1:1 netropsin-decamer d(CCIICICCII)2 complex with a single bound netropsin.
Shi K, Mitra SN, Sundaralingam M
Acta Crystallogr D Biol Crystallogr 58 601-6 (2002)
PMID: 11914483

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113716 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*CP*CP*IP*IP*CP*IP*CP*CP*IP*I)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 2.97 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand NT 1 x NT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: C2
Unit cell:
a: 62.4Å b: 24.47Å c: 36.31Å
α: 90° β: 110.09° γ: 90°
R-values:
R R work R free
0.196 0.196 0.245
Expression system: Not provided

Quick links

Citations

1 review citation

Nucleic acid crystallography: current progress.
Egli M. (2004)
4 other articles

1 mention without citation

Exploring DNA structure with Cn3D.
Porter et al. (2007)