1dbf Citations

The 1.30 A resolution structure of the Bacillus subtilis chorismate mutase catalytic homotrimer.

Acta Crystallogr D Biol Crystallogr 56 673-83 (2000)
Cited: 12 times
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Abstract

The crystal structure of the Bacillus subtilis chorismate mutase, an enzyme of the aromatic amino acids biosynthetic pathway, was determined to 1.30 A resolution. The structure of the homotrimer was determined by molecular replacement using orthorhombic crystals of space group P2(1)2(1)2(1) with unit-cell parameters a = 52.2, b = 83. 8, c = 86.0 A. The ABC trimer of the monoclinic crystal structure [Chook et al. (1994), J. Mol. Biol. 240, 476-500] was used as the starting model. The final coordinates are composed of three complete polypeptide chains of 127 amino-acid residues. In addition, there are nine sulfate ions, five glycerol molecules and 424 water molecules clearly visible in the structure. This structure was refined with aniosotropic temperature factors, has excellent geometry and a crystallographic R factor of 0.169 with an R(free) of 0.236. The three active sites of the macromolecule are at the subunit interfaces, with residues from two subunits contributing to each site. This orthorhombic crystal form was grown using ammonium sulfate as the precipitant; glycerol was used as a cryoprotectant during data collection. A glycerol molecule and sulfate ion in each of the active sites was found mimicking a transition-state analog. In this structure, the C-terminal tails of the subunits of the trimer are hydrogen bonded to residues of the active site of neighboring trimers in the crystal and thus cross-link the molecules in the crystal lattice.

Articles - 1dbf mentioned but not cited (5)

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  2. Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different. De S, Krishnadev O, Srinivasan N, Rekha N. BMC Struct Biol 5 15 (2005)
  3. Electrostatic transition state stabilization rather than reactant destabilization provides the chemical basis for efficient chorismate mutase catalysis. Burschowsky D, van Eerde A, Ökvist M, Kienhöfer A, Kast P, Hilvert D, Krengel U. Proc Natl Acad Sci U S A 111 17516-17521 (2014)
  4. Evolving the naturally compromised chorismate mutase from Mycobacterium tuberculosis to top performance. Fahrig-Kamarauskait J, Würth-Roderer K, Thorbjørnsrud HV, Mailand S, Krengel U, Kast P. J Biol Chem 295 17514-17534 (2020)
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Articles citing this publication (7)

  1. TROSY NMR with partially deuterated proteins. Eletsky A, Kienhöfer A, Pervushin K. J Biomol NMR 20 177-180 (2001)
  2. 1.6 A crystal structure of the secreted chorismate mutase from Mycobacterium tuberculosis: novel fold topology revealed. Okvist M, Dey R, Sasso S, Grahn E, Kast P, Krengel U. J Mol Biol 357 1483-1499 (2006)
  3. Biochemical and structural characterization of the secreted chorismate mutase (Rv1885c) from Mycobacterium tuberculosis H37Rv: an *AroQ enzyme not regulated by the aromatic amino acids. Kim SK, Reddy SK, Nelson BC, Vasquez GB, Davis A, Howard AJ, Patterson S, Gilliland GL, Ladner JE, Reddy PT. J Bacteriol 188 8638-8648 (2006)
  4. The crystal structure of chorismate lyase shows a new fold and a tightly retained product. Gallagher DT, Mayhew M, Holden MJ, Howard A, Kim KJ, Vilker VL. Proteins 44 304-311 (2001)
  5. Direct NMR observation and DFT calculations of a hydrogen bond at the active site of a 44 kDa enzyme. Eletsky A, Heinz T, Moreira O, Kienhöfer A, Hilvert D, Pervushi K. J Biomol NMR 24 31-39 (2002)
  6. Mechanistic implications for the chorismatase FkbO based on the crystal structure. Juneja P, Hubrich F, Diederichs K, Welte W, Andexer JN. J Mol Biol 426 105-115 (2014)
  7. Combining Random Mutagenesis and Metabolic Engineering for Enhanced Tryptophan Production in Synechocystis sp. Strain PCC 6803. Deshpande A, Vue J, Morgan J. Appl Environ Microbiol 86 e02816-19 (2020)