› 1d66

X-ray diffraction
2.7Å resolution

DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX

Released:
DOI: 10.2210/pdb1d66/pdb
PDB entry 1d66 coloured by chain, front view.
PDB entry 1d66 coloured by chain, side view.
PDB entry 1d66 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
DNA recognition by GAL4: structure of a protein-DNA complex.
Marmorstein R, Carey M, Ptashne M, Harrison SC
Nature 356 408-14 (1992)
PMID: 1557122

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113626 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
Regulatory protein GAL4 Chains: A, B
Molecule details ›
Chains: A, B
Length: 66 amino acids
Theoretical weight: 7.82 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P04386 (Residues: 1-65; Coverage: 7%)
Gene names: GAL4, YPL248C
Sequence domains: Fungal Zn(2)-Cys(6) binuclear cluster domain
Structure domains:
DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3') Chain: D
Molecule details ›
Chain: D
Length: 19 nucleotides
Theoretical weight: 5.83 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Not provided
DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*TP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3') Chain: E
Molecule details ›
Chain: E
Length: 19 nucleotides
Theoretical weight: 5.82 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand CD 4 x CD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P43212
Unit cell:
a: 80.85Å b: 80.85Å c: 73.7Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.23 0.23 not available
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

56 review citations

Yeast carbon catabolite repression.
Gancedo JM. (1998)
55 more

24 mentions without citation

From Lipid Homeostasis to Differentiation: Old and New Functions of the Zinc Cluster Proteins Ecm22, Upc2, Sut1 and Sut2.
Joshua et al. (2017)
23 more