Reviews - 1d2n mentioned but not cited (3)
- Cellular functions of NSF: not just SNAPs and SNAREs. Zhao C, Slevin JT, Whiteheart SW. FEBS Lett 581 2140-2149 (2007)
- Requirements for the catalytic cycle of the N-ethylmaleimide-Sensitive Factor (NSF). Zhao C, Smith EC, Whiteheart SW. Biochim Biophys Acta 1823 159-171 (2012)
- Torsins: not your typical AAA+ ATPases. Rose AE, Brown RS, Schlieker C. Crit Rev Biochem Mol Biol 50 532-549 (2015)
Articles - 1d2n mentioned but not cited (15)
- Structure-based predictions of Rad1, Rad9, Hus1 and Rad17 participation in sliding clamp and clamp-loading complexes. Venclovas C, Thelen MP. Nucleic Acids Res 28 2481-2493 (2000)
- Recognition of functional sites in protein structures. Shulman-Peleg A, Nussinov R, Wolfson HJ. J Mol Biol 339 607-633 (2004)
- Physically realistic homology models built with ROSETTA can be more accurate than their templates. Misura KM, Chivian D, Rohl CA, Kim DE, Baker D. Proc Natl Acad Sci U S A 103 5361-5366 (2006)
- The structural basis for regulated assembly and function of the transcriptional activator NtrC. De Carlo S, Chen B, Hoover TR, Kondrashkina E, Nogales E, Nixon BT. Genes Dev 20 1485-1495 (2006)
- Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners. Baldassi C, Zamparo M, Feinauer C, Procaccini A, Zecchina R, Weigt M, Pagnani A. PLoS One 9 e92721 (2014)
- GABAA receptor trafficking is regulated by protein kinase C(epsilon) and the N-ethylmaleimide-sensitive factor. Chou WH, Wang D, McMahon T, Qi ZH, Song M, Zhang C, Shokat KM, Messing RO. J Neurosci 30 13955-13965 (2010)
- Automated cryo-EM structure refinement using correlation-driven molecular dynamics. Igaev M, Kutzner C, Bock LV, Vaiana AC, Grubmüller H. Elife 8 e43542 (2019)
- Local and global mobility in the ClpA AAA+ chaperone detected by cryo-electron microscopy: functional connotations. Effantin G, Ishikawa T, De Donatis GM, Maurizi MR, Steven AC. Structure 18 553-562 (2010)
- An interaction between the Walker A and D-loop motifs is critical to ATP hydrolysis and cooperativity in bacteriophage T4 Rad50. De la Rosa MB, Nelson SW. J Biol Chem 286 26258-26266 (2011)
- Mechanistic insights into the SNARE complex disassembly. Huang X, Sun S, Wang X, Fan F, Zhou Q, Lu S, Cao Y, Wang QW, Dong MQ, Yao J, Sui SF. Sci Adv 5 eaau8164 (2019)
- Nucleotide-dependent conformational changes in the N-Ethylmaleimide Sensitive Factor (NSF) and their potential role in SNARE complex disassembly. Moeller A, Zhao C, Fried MG, Wilson-Kubalek EM, Carragher B, Whiteheart SW. J Struct Biol 177 335-343 (2012)
- SymmRef: a flexible refinement method for symmetric multimers. Mashiach-Farkash E, Nussinov R, Wolfson HJ. Proteins 79 2607-2623 (2011)
- Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell. Kienle N, Kloepper TH, Fasshauer D. BMC Evol Biol 16 215 (2016)
- On the Effect of Sphere-Overlap on Super Coarse-Grained Models of Protein Assemblies. Degiacomi MT. J Am Soc Mass Spectrom 30 113-117 (2019)
- MR-REX: molecular replacement by cooperative conformational search and occupancy optimization on low-accuracy protein models. Virtanen JJ, Zhang Y. Acta Crystallogr D Struct Biol 74 606-620 (2018)
Reviews citing this publication (62)
- The 26S proteasome: a molecular machine designed for controlled proteolysis. Voges D, Zwickl P, Baumeister W. Annu Rev Biochem 68 1015-1068 (1999)
- AAA+ proteins: have engine, will work. Hanson PI, Whiteheart SW. Nat Rev Mol Cell Biol 6 519-529 (2005)
- Membrane fusion and exocytosis. Jahn R, Südhof TC. Annu Rev Biochem 68 863-911 (1999)
- AAA+ superfamily ATPases: common structure--diverse function. Ogura T, Wilkinson AJ. Genes Cells 6 575-597 (2001)
- SNARE-mediated membrane fusion. Chen YA, Scheller RH. Nat Rev Mol Cell Biol 2 98-106 (2001)
- Evolutionary relationships and structural mechanisms of AAA+ proteins. Erzberger JP, Berger JM. Annu Rev Biophys Biomol Struct 35 93-114 (2006)
- Snares and Munc18 in synaptic vesicle fusion. Rizo J, Südhof TC. Nat Rev Neurosci 3 641-653 (2002)
- AAA proteins. Lords of the ring. Vale RD. J Cell Biol 150 F13-9 (2000)
- Secretory granule exocytosis. Burgoyne RD, Morgan A. Physiol Rev 83 581-632 (2003)
- Coiled coils in both intracellular vesicle and viral membrane fusion. Skehel JJ, Wiley DC. Cell 95 871-874 (1998)
- Regulation of chromosome replication. Kelly TJ, Brown GW. Annu Rev Biochem 69 829-880 (2000)
- Molecular perspectives on p97-VCP: progress in understanding its structure and diverse biological functions. Wang Q, Song C, Li CC. J Struct Biol 146 44-57 (2004)
- The role of bacterial enhancer binding proteins as specialized activators of σ54-dependent transcription. Bush M, Dixon R. Microbiol Mol Biol Rev 76 497-529 (2012)
- Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology. Joly N, Engl C, Jovanovic G, Huvet M, Toni T, Sheng X, Stumpf MP, Buck M. FEMS Microbiol Rev 34 797-827 (2010)
- On helicases and other motor proteins. Enemark EJ, Joshua-Tor L. Curr Opin Struct Biol 18 243-257 (2008)
- AAA proteases: cellular machines for degrading membrane proteins. Langer T. Trends Biochem Sci 25 247-251 (2000)
- Molecular machines for protein degradation. Groll M, Bochtler M, Brandstetter H, Clausen T, Huber R. Chembiochem 6 222-256 (2005)
- The replication clamp-loading machine at work in the three domains of life. Indiani C, O'Donnell M. Nat Rev Mol Cell Biol 7 751-761 (2006)
- Motors and switches: AAA+ machines within the replisome. Davey MJ, Jeruzalmi D, Kuriyan J, O'Donnell M. Nat Rev Mol Cell Biol 3 826-835 (2002)
- Substrate access and processing by the 20S proteasome core particle. Groll M, Huber R. Int J Biochem Cell Biol 35 606-616 (2003)
- Mechanisms and regulation of DNA replication initiation in eukaryotes. Parker MW, Botchan MR, Berger JM. Crit Rev Biochem Mol Biol 52 107-144 (2017)
- Membrane protein degradation by AAA proteases in mitochondria. Arnold I, Langer T. Biochim Biophys Acta 1592 89-96 (2002)
- Clamp loaders and sliding clamps. Jeruzalmi D, O'Donnell M, Kuriyan J. Curr Opin Struct Biol 12 217-224 (2002)
- ATPases as drug targets: learning from their structure. Chène P. Nat Rev Drug Discov 1 665-673 (2002)
- The proteasome: a macromolecular assembly designed for controlled proteolysis. Zwickl P, Voges D, Baumeister W. Philos Trans R Soc Lond B Biol Sci 354 1501-1511 (1999)
- The ClpB/Hsp104 molecular chaperone-a protein disaggregating machine. Lee S, Sowa ME, Choi JM, Tsai FT. J Struct Biol 146 99-105 (2004)
- NSF and p97/VCP: similar at first, different at last. Brunger AT, DeLaBarre B. FEBS Lett 555 126-133 (2003)
- Structural insights into the molecular mechanism of Ca(2+)-dependent exocytosis. Brunger AT. Curr Opin Neurobiol 10 293-302 (2000)
- Slicing a protease: structural features of the ATP-dependent Lon proteases gleaned from investigations of isolated domains. Rotanova TV, Botos I, Melnikov EE, Rasulova F, Gustchina A, Maurizi MR, Wlodawer A. Protein Sci 15 1815-1828 (2006)
- Crystal structure of the AAA+ alpha domain of E. coli Lon protease at 1.9A resolution. Botos I, Melnikov EE, Cherry S, Khalatova AG, Rasulova FS, Tropea JE, Maurizi MR, Rotanova TV, Gustchina A, Wlodawer A. J Struct Biol 146 113-122 (2004)
- DNA polymerase clamp loaders and DNA recognition. Bowman GD, Goedken ER, Kazmirski SL, O'Donnell M, Kuriyan J. FEBS Lett 579 863-867 (2005)
- Minimal protein-folding systems in hyperthermophilic archaea. Laksanalamai P, Whitehead TA, Robb FT. Nat Rev Microbiol 2 315-324 (2004)
- Structure and mechanism of ATP-dependent proteases. Schmidt M, Lupas AN, Finley D. Curr Opin Chem Biol 3 584-591 (1999)
- The pre-synaptic fusion machinery. Brunger AT, Choi UB, Lai Y, Leitz J, White KI, Zhou Q. Curr Opin Struct Biol 54 179-188 (2019)
- Fundamental Characteristics of AAA+ Protein Family Structure and Function. Miller JM, Miller JM, Enemark EJ. Archaea 2016 9294307 (2016)
- Protein binding and disruption by Clp/Hsp100 chaperones. Maurizi MR, Xia D. Structure 12 175-183 (2004)
- Broad yet high substrate specificity: the challenge of AAA+ proteins. Mogk A, Dougan D, Weibezahn J, Schlieker C, Turgay K, Bukau B. J Struct Biol 146 90-98 (2004)
- Structural frameworks for considering microbial protein- and nucleic acid-dependent motor ATPases. Thomsen ND, Berger JM. Mol Microbiol 69 1071-1090 (2008)
- Recent Advances in Deciphering the Structure and Molecular Mechanism of the AAA+ ATPase N-Ethylmaleimide-Sensitive Factor (NSF). Zhao M, Brunger AT. J Mol Biol 428 1912-1926 (2016)
- Review: Progresses in understanding N-ethylmaleimide sensitive factor (NSF) mediated disassembly of SNARE complexes. Ryu JK, Jahn R, Yoon TY. Biopolymers 105 518-531 (2016)
- Structural insights into the molecular mechanism of calcium-dependent vesicle-membrane fusion. Brunger AT. Curr Opin Struct Biol 11 163-173 (2001)
- Structure and function of the membrane deformation AAA ATPase Vps4. Hill CP, Babst M. Biochim Biophys Acta 1823 172-181 (2012)
- Structure of proteins involved in synaptic vesicle fusion in neurons. Brunger AT. Annu Rev Biophys Biomol Struct 30 157-171 (2001)
- Comparison of the multiple oligomeric structures observed for the Rvb1 and Rvb2 proteins. Cheung KL, Huen J, Houry WA, Ortega J. Biochem Cell Biol 88 77-88 (2010)
- Machinery of protein folding and unfolding. Zhang X, Beuron F, Freemont PS. Curr Opin Struct Biol 12 231-238 (2002)
- Structure and role of coupling proteins in conjugal DNA transfer. Gomis-Rüth FX, de la Cruz F, Coll M. Res Microbiol 153 199-204 (2002)
- Membrane traffic: what drives the AAA motor? Dalal S, Hanson PI. Cell 104 5-8 (2001)
- N-ethylmaleimide-sensitive factor: a redox sensor in exocytosis. Lowenstein CJ, Tsuda H. Biol Chem 387 1377-1383 (2006)
- Bacterial helicases. Egelman EH. J Struct Biol 124 123-128 (1998)
- Protein-protein interactions in intracellular membrane fusion. Misura KM, May AP, Weis WI. Curr Opin Struct Biol 10 662-671 (2000)
- F(0)F(1)-ATP synthase: general structural features of 'ATP-engine' and a problem on free energy transduction. Muneyuki E, Noji H, Amano T, Masaike T, Yoshida M. Biochim Biophys Acta 1458 467-481 (2000)
- Mechanisms of hexameric helicases. Fernandez AJ, Berger JM. Crit Rev Biochem Mol Biol 56 621-639 (2021)
- Microtubule severing. Quarmby LM, Lohret TA. Cell Motil Cytoskeleton 43 1-9 (1999)
- The hexamerization domain of N-ethylmaleimide-sensitive factor: structural clues to chaperone function. Neuwald AF. Structure 7 R19-23 (1999)
- Alterations in Cellular Processes Involving Vesicular Trafficking and Implications in Drug Delivery. Muro S. Biomimetics (Basel) 3 E19 (2018)
- Assessing heterogeneity in oligomeric AAA+ machines. Sysoeva TA. Cell Mol Life Sci 74 1001-1018 (2017)
- Molecular structures of proteins involved in vesicle fusion. Ybe JA, Wakeham DE, Brodsky FM, Hwang PK. Traffic 1 474-479 (2000)
- Vesicle trafficking and vesicle fusion: mechanisms, biological functions, and their implications for potential disease therapy. Cui L, Li H, Xi Y, Hu Q, Liu H, Fan J, Xiang Y, Zhang X, Shui W, Lai Y. Mol Biomed 3 29 (2022)
- Synaptic transmission: two players team up for a new tune. Jahn R. Curr Biol 8 R856-8 (1998)
- On the difficulties of characterizing weak protein interactions that are critical for neurotransmitter release. Rizo J, David G, Fealey ME, Jaczynska K. FEBS Open Bio 12 1912-1938 (2022)
- Archaeal proteasomes: potential in metabolic engineering. Maupin-Furlow JA, Kaczowka SJ, Reuter CJ, Zuobi-Hasona K, Gil MA. Metab Eng 5 151-163 (2003)
- Genetic modifiers of comatose mutations in Drosophila: insights into neuronal NSF (N-ethylmaleimide-sensitive fusion factor) functions. Sanyal S, Krishnan KS. J Neurogenet 26 348-359 (2012)
Articles citing this publication (145)
- Evolutionary history and higher order classification of AAA+ ATPases. Iyer LM, Leipe DD, Koonin EV, Aravind L. J Struct Biol 146 11-31 (2004)
- Structure of the AAA ATPase p97. Zhang X, Shaw A, Bates PA, Newman RH, Gowen B, Orlova E, Gorman MA, Kondo H, Dokurno P, Lally J, Leonard G, Meyer H, van Heel M, Freemont PS. Mol Cell 6 1473-1484 (2000)
- Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex. Bowman GD, O'Donnell M, Kuriyan J. Nature 429 724-730 (2004)
- The structures of HsIU and the ATP-dependent protease HsIU-HsIV. Bochtler M, Hartmann C, Song HK, Bourenkov GP, Bartunik HD, Huber R. Nature 403 800-805 (2000)
- Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains. DeLaBarre B, Brunger AT. Nat Struct Biol 10 856-863 (2003)
- The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Gomis-Rüth FX, Moncalián G, Pérez-Luque R, González A, Cabezón E, de la Cruz F, Coll M. Nature 409 637-641 (2001)
- Structure of the apoptotic protease-activating factor 1 bound to ADP. Riedl SJ, Li W, Chao Y, Schwarzenbacher R, Shi Y. Nature 434 926-933 (2005)
- Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling. Erzberger JP, Mott ML, Berger JM. Nat Struct Mol Biol 13 676-683 (2006)
- Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III. Jeruzalmi D, O'Donnell M, Kuriyan J. Cell 106 429-441 (2001)
- Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen. Li D, Zhao R, Lilyestrom W, Gai D, Zhang R, DeCaprio JA, Fanning E, Jochimiak A, Szakonyi G, Chen XS. Nature 423 512-518 (2003)
- Crystal and solution structures of an HslUV protease-chaperone complex. Sousa MC, Trame CB, Tsuruta H, Wilbanks SM, Reddy VS, McKay DB. Cell 103 633-643 (2000)
- Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Jeruzalmi D, Yurieva O, Zhao Y, Young M, Stewart J, Hingorani M, O'Donnell M, Kuriyan J. Cell 106 417-428 (2001)
- Mechanistic insights into the recycling machine of the SNARE complex. Zhao M, Wu S, Zhou Q, Vivona S, Cipriano DJ, Cheng Y, Brunger AT. Nature 518 61-67 (2015)
- Substrate recognition by the AAA+ chaperone ClpB. Schlieker C, Weibezahn J, Patzelt H, Tessarz P, Strub C, Zeth K, Erbse A, Schneider-Mergener J, Chin JW, Schultz PG, Bukau B, Mogk A. Nat Struct Mol Biol 11 607-615 (2004)
- The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation. Erzberger JP, Pirruccello MM, Berger JM. EMBO J 21 4763-4773 (2002)
- Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control. Liu J, Smith CL, DeRyckere D, DeAngelis K, Martin GS, Berger JM. Mol Cell 6 637-648 (2000)
- Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains. Lee SY, De La Torre A, Yan D, Kustu S, Nixon BT, Wemmer DE. Genes Dev 17 2552-2563 (2003)
- VirB11 ATPases are dynamic hexameric assemblies: new insights into bacterial type IV secretion. Savvides SN, Yeo HJ, Beck MR, Blaesing F, Lurz R, Lanka E, Buhrdorf R, Fischer W, Haas R, Waksman G. EMBO J 22 1969-1980 (2003)
- Cooperative kinetics of both Hsp104 ATPase domains and interdomain communication revealed by AAA sensor-1 mutants. Hattendorf DA, Lindquist SL. EMBO J 21 12-21 (2002)
- Nucleotide dependent motion and mechanism of action of p97/VCP. DeLaBarre B, Brunger AT. J Mol Biol 347 437-452 (2005)
- Nucleotide-dependent conformational changes in a protease-associated ATPase HsIU. Wang J, Song JJ, Seong IS, Franklin MC, Kamtekar S, Eom SH, Chung CH. Structure 9 1107-1116 (2001)
- Structure and mechanism of the RuvB Holliday junction branch migration motor. Putnam CD, Clancy SB, Tsuruta H, Gonzalez S, Wetmur JG, Tainer JA. J Mol Biol 311 297-310 (2001)
- Reconstitution of the Mcm2-7p heterohexamer, subunit arrangement, and ATP site architecture. Davey MJ, Indiani C, O'Donnell M. J Biol Chem 278 4491-4499 (2003)
- Visualization of substrate binding and translocation by the ATP-dependent protease, ClpXP. Ortega J, Singh SK, Ishikawa T, Maurizi MR, Steven AC. Mol Cell 6 1515-1521 (2000)
- A major conformational change in p97 AAA ATPase upon ATP binding. Rouiller I, Butel VM, Latterich M, Milligan RA, Wilson-Kubalek EM. Mol Cell 6 1485-1490 (2000)
- Crystal structure of the Caenorhabditis elegans apoptosome reveals an octameric assembly of CED-4. Qi S, Pang Y, Hu Q, Liu Q, Li H, Zhou Y, He T, Liang Q, Liu Y, Yuan X, Luo G, Li H, Wang J, Yan N, Shi Y. Cell 141 446-457 (2010)
- Crystal structure of the human AAA+ protein RuvBL1. Matias PM, Gorynia S, Donner P, Carrondo MA. J Biol Chem 281 38918-38929 (2006)
- Lon and Clp family proteases and chaperones share homologous substrate-recognition domains. Smith CK, Baker TA, Sauer RT. Proc Natl Acad Sci U S A 96 6678-6682 (1999)
- Interplay between an AAA module and an integrin I domain may regulate the function of magnesium chelatase. Fodje MN, Hansson A, Hansson M, Olsen JG, Gough S, Willows RD, Al-Karadaghi S. J Mol Biol 311 111-122 (2001)
- Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits. Imada K, Minamino T, Tahara A, Namba K. Proc Natl Acad Sci U S A 104 485-490 (2007)
- ATP-mediated conformational changes in the RecA filament. VanLoock MS, Yu X, Yang S, Lai AL, Low C, Campbell MJ, Egelman EH. Structure 11 187-196 (2003)
- The TOR1A (DYT1) gene family and its role in early onset torsion dystonia. Ozelius LJ, Page CE, Klein C, Hewett JW, Mineta M, Leung J, Shalish C, Bressman SB, de Leon D, Brin MF, Fahn S, Corey DP, Breakefield XO. Genomics 62 377-384 (1999)
- Structure and mechanism of the hexameric MecA-ClpC molecular machine. Wang F, Mei Z, Qi Y, Yan C, Hu Q, Wang J, Shi Y. Nature 471 331-335 (2011)
- Structural and functional studies of MinD ATPase: implications for the molecular recognition of the bacterial cell division apparatus. Hayashi I, Oyama T, Morikawa K. EMBO J 20 1819-1828 (2001)
- Arrangement of subunits in 20 S particles consisting of NSF, SNAPs, and SNARE complexes. Hohl TM, Parlati F, Wimmer C, Rothman JE, Söllner TH, Engelhardt H. Mol Cell 2 539-548 (1998)
- ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC. Hayashi F, Suzuki H, Iwase R, Uzumaki T, Miyake A, Shen JR, Imada K, Furukawa Y, Yonekura K, Namba K, Ishiura M. Genes Cells 8 287-296 (2003)
- Crystal structure of the extracellular protein secretion NTPase EpsE of Vibrio cholerae. Robien MA, Krumm BE, Sandkvist M, Hol WG. J Mol Biol 333 657-674 (2003)
- The crystal structure of AF1521 a protein from Archaeoglobus fulgidus with homology to the non-histone domain of macroH2A. Allen MD, Buckle AM, Cordell SC, Löwe J, Bycroft M. J Mol Biol 330 503-511 (2003)
- NSF N-terminal domain crystal structure: models of NSF function. Yu RC, Jahn R, Brunger AT. Mol Cell 4 97-107 (1999)
- The crystal structure of the AAA domain of the ATP-dependent protease FtsH of Escherichia coli at 1.5 A resolution. Krzywda S, Brzozowski AM, Verma C, Karata K, Ogura T, Wilkinson AJ. Structure 10 1073-1083 (2002)
- Crystal structure of the vesicular transport protein Sec17: implications for SNAP function in SNARE complex disassembly. Rice LM, Brunger AT. Mol Cell 4 85-95 (1999)
- SNARE-complex disassembly by NSF follows synaptic-vesicle fusion. Littleton JT, Barnard RJ, Titus SA, Slind J, Chapman ER, Ganetzky B. Proc Natl Acad Sci U S A 98 12233-12238 (2001)
- Going through the motions: the ATPase cycle of p97. Pye VE, Dreveny I, Briggs LC, Sands C, Beuron F, Zhang X, Freemont PS. J Struct Biol 156 12-28 (2006)
- Analysis of the role of PCNA-DNA contacts during clamp loading. McNally R, Bowman GD, Goedken ER, O'Donnell M, Kuriyan J. BMC Struct Biol 10 3 (2010)
- Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophilus HB8. Yamada K, Kunishima N, Mayanagi K, Ohnishi T, Nishino T, Iwasaki H, Shinagawa H, Morikawa K. Proc Natl Acad Sci U S A 98 1442-1447 (2001)
- Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8. Niwa H, Tsuchiya D, Makyio H, Yoshida M, Morikawa K. Structure 10 1415-1423 (2002)
- The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element. Coles M, Diercks T, Liermann J, Gröger A, Rockel B, Baumeister W, Koretke KK, Lupas A, Peters J, Kessler H. Curr Biol 9 1158-1168 (1999)
- Crystal structure of the SF3 helicase from adeno-associated virus type 2. James JA, Escalante CR, Yoon-Robarts M, Edwards TA, Linden RM, Aggarwal AK. Structure 11 1025-1035 (2003)
- Crystal structure of the amino-terminal domain of N-ethylmaleimide-sensitive fusion protein. May AP, Misura KM, Whiteheart SW, Weis WI. Nat Cell Biol 1 175-182 (1999)
- Model for the motor component of dynein heavy chain based on homology to the AAA family of oligomeric ATPases. Mocz G, Gibbons IR. Structure 9 93-103 (2001)
- The NAD(+)-dependent Sir2p histone deacetylase is a negative regulator of chromosomal DNA replication. Pappas DL, Frisch R, Weinreich M. Genes Dev 18 769-781 (2004)
- Structural basis of the nucleotide driven conformational changes in the AAA+ domain of transcription activator PspF. Rappas M, Schumacher J, Niwa H, Buck M, Zhang X. J Mol Biol 357 481-492 (2006)
- Analysis of nucleotide binding to P97 reveals the properties of a tandem AAA hexameric ATPase. Briggs LC, Baldwin GS, Miyata N, Kondo H, Zhang X, Freemont PS. J Biol Chem 283 13745-13752 (2008)
- Molecular determinants for ATP-binding in proteins: a data mining and quantum chemical analysis. Mao L, Wang Y, Liu Y, Hu X. J Mol Biol 336 787-807 (2004)
- Crystal structure of the N-terminal domain of the DnaB hexameric helicase. Fass D, Bogden CE, Berger JM. Structure 7 691-698 (1999)
- Unscrambling an egg: protein disaggregation by AAA+ proteins. Weibezahn J, Bukau B, Mogk A. Microb Cell Fact 3 1 (2004)
- Atomic structure of the clamp loader small subunit from Pyrococcus furiosus. Oyama T, Ishino Y, Cann IK, Ishino S, Morikawa K. Mol Cell 8 455-463 (2001)
- Spring-loaded unraveling of a single SNARE complex by NSF in one round of ATP turnover. Ryu JK, Min D, Rah SH, Kim SJ, Park Y, Kim H, Hyeon C, Kim HM, Jahn R, Yoon TY. Science 347 1485-1489 (2015)
- Pch2 is a hexameric ring ATPase that remodels the chromosome axis protein Hop1. Chen C, Jomaa A, Jomaa A, Ortega J, Alani EE. Proc Natl Acad Sci U S A 111 E44-53 (2014)
- ATP-dependent transcriptional activation by bacterial PspF AAA+protein. Schumacher J, Zhang X, Jones S, Bordes P, Buck M. J Mol Biol 338 863-875 (2004)
- Katanin spiral and ring structures shed light on power stroke for microtubule severing. Zehr E, Szyk A, Piszczek G, Szczesna E, Zuo X, Roll-Mecak A. Nat Struct Mol Biol 24 717-725 (2017)
- Analysis of the AAA sensor-2 motif in the C-terminal ATPase domain of Hsp104 with a site-specific fluorescent probe of nucleotide binding. Hattendorf DA, Lindquist SL. Proc Natl Acad Sci U S A 99 2732-2737 (2002)
- Pctaire1 phosphorylates N-ethylmaleimide-sensitive fusion protein: implications in the regulation of its hexamerization and exocytosis. Liu Y, Cheng K, Gong K, Fu AK, Ip NY. J Biol Chem 281 9852-9858 (2006)
- The ATP-dependent helicase RUVBL1/TIP49a associates with tubulin during mitosis. Gartner W, Rossbacher J, Zierhut B, Daneva T, Base W, Weissel M, Waldhäusl W, Pasternack MS, Wagner L. Cell Motil Cytoskeleton 56 79-93 (2003)
- Electron cryomicroscopy structure of N-ethyl maleimide sensitive factor at 11 A resolution. Furst J, Sutton RB, Chen J, Brunger AT, Grigorieff N. EMBO J 22 4365-4374 (2003)
- Interaction of gp16 with pRNA and DNA for genome packaging by the motor of bacterial virus phi29. Lee TJ, Guo P. J Mol Biol 356 589-599 (2006)
- Structural principles of SNARE complex recognition by the AAA+ protein NSF. White KI, Zhao M, Choi UB, Pfuetzner RA, Brunger AT. Elife 7 e38888 (2018)
- Modeling AAA+ ring complexes from monomeric structures. Diemand AV, Lupas AN. J Struct Biol 156 230-243 (2006)
- Out-of-plane motions in open sliding clamps: molecular dynamics simulations of eukaryotic and archaeal proliferating cell nuclear antigen. Kazmirski SL, Zhao Y, Bowman GD, O'donnell M, Kuriyan J. Proc Natl Acad Sci U S A 102 13801-13806 (2005)
- The roles of the residues on the channel beta-hairpin and loop structures of simian virus 40 hexameric helicase. Shen J, Gai D, Patrick A, Greenleaf WB, Chen XS. Proc Natl Acad Sci U S A 102 11248-11253 (2005)
- Three semidominant barley mutants with single amino acid substitutions in the smallest magnesium chelatase subunit form defective AAA+ hexamers. Hansson A, Willows RD, Roberts TH, Hansson M. Proc Natl Acad Sci U S A 99 13944-13949 (2002)
- Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex. Kazmirski SL, Podobnik M, Weitze TF, O'Donnell M, Kuriyan J. Proc Natl Acad Sci U S A 101 16750-16755 (2004)
- News Mechanics of membrane fusion. Rizo J, Südhof TC. Nat Struct Biol 5 839-842 (1998)
- Three-dimensional structure of AAA ATPase Vps4: advancing structural insights into the mechanisms of endosomal sorting and enveloped virus budding. Landsberg MJ, Vajjhala PR, Rothnagel R, Munn AL, Hankamer B. Structure 17 427-437 (2009)
- An NSF function distinct from ATPase-dependent SNARE disassembly is essential for Golgi membrane fusion. Müller JM, Rabouille C, Newman R, Shorter J, Freemont P, Schiavo G, Warren G, Shima DT. Nat Cell Biol 1 335-340 (1999)
- Low-resolution structure refinement in electron microscopy. Chen JZ, Fürst J, Chapman MS, Grigorieff N. J Struct Biol 144 144-151 (2003)
- Proteolysis of bacteriophage lambda CII by Escherichia coli FtsH (HflB). Shotland Y, Shifrin A, Ziv T, Teff D, Koby S, Kobiler O, Oppenheim AB. J Bacteriol 182 3111-3116 (2000)
- Structural characterization of full-length NSF and 20S particles. Chang LF, Chen S, Liu CC, Pan X, Jiang J, Bai XC, Xie X, Wang HW, Sui SF. Nat Struct Mol Biol 19 268-275 (2012)
- Congress AAA proteins: in search of a common molecular basis. International Meeting on Cellular Functions of AAA Proteins. Maurizi MR, Li CC. EMBO Rep 2 980-985 (2001)
- Structural analysis of Escherichia coli ThiF. Duda DM, Walden H, Sfondouris J, Schulman BA. J Mol Biol 349 774-786 (2005)
- nsf is essential for organization of myelinated axons in zebrafish. Woods IG, Lyons DA, Voas MG, Pogoda HM, Talbot WS. Curr Biol 16 636-648 (2006)
- Modular architecture of the hexameric human mitochondrial DNA helicase. Ziebarth TD, Farr CL, Kaguni LS. J Mol Biol 367 1382-1391 (2007)
- Processive ATP-driven substrate disassembly by the N-ethylmaleimide-sensitive factor (NSF) molecular machine. Cipriano DJ, Jung J, Vivona S, Fenn TD, Brunger AT, Bryant Z. J Biol Chem 288 23436-23445 (2013)
- Amino acid substitutions in the C-terminal AAA+ module of Hsp104 prevent substrate recognition by disrupting oligomerization and cause high temperature inactivation. Tkach JM, Glover JR. J Biol Chem 279 35692-35701 (2004)
- Mutational analysis of the functional motifs of RuvB, an AAA+ class helicase and motor protein for holliday junction branch migration. Iwasaki H, Han YW, Okamoto T, Ohnishi T, Yoshikawa M, Yamada K, Toh H, Daiyasu H, Ogura T, Shinagawa H. Mol Microbiol 36 528-538 (2000)
- Probing the mechanism of ATP hydrolysis and substrate translocation in the AAA protease FtsH by modelling and mutagenesis. Karata K, Verma CS, Wilkinson AJ, Ogura T. Mol Microbiol 39 890-903 (2001)
- Tumor necrosis factor receptor 1 is an ATPase regulated by silencer of death domain. Miki K, Eddy EM. Mol Cell Biol 22 2536-2543 (2002)
- Direct evidence that a conserved arginine in RuvB AAA+ ATPase acts as an allosteric effector for the ATPase activity of the adjacent subunit in a hexamer. Hishida T, Han YW, Fujimoto S, Iwasaki H, Shinagawa H. Proc Natl Acad Sci U S A 101 9573-9577 (2004)
- Dissecting the N-ethylmaleimide-sensitive factor: required elements of the N and D1 domains. Zhao C, Matveeva EA, Ren Q, Whiteheart SW. J Biol Chem 285 761-772 (2010)
- Structure of adeno-associated virus type 2 Rep40-ADP complex: insight into nucleotide recognition and catalysis by superfamily 3 helicases. James JA, Aggarwal AK, Linden RM, Escalante CR. Proc Natl Acad Sci U S A 101 12455-12460 (2004)
- Crystal structure of the Sec18p N-terminal domain. Babor SM, Fass D. Proc Natl Acad Sci U S A 96 14759-14764 (1999)
- Atad3 function is essential for early post-implantation development in the mouse. Goller T, Seibold UK, Kremmer E, Voos W, Kolanus W. PLoS One 8 e54799 (2013)
- Characterization of novel proteins based on known protein structures. Koppensteiner WA, Lackner P, Wiederstein M, Sippl MJ. J Mol Biol 296 1139-1152 (2000)
- Crystal structure of the YjeE protein from Haemophilus influenzae: a putative Atpase involved in cell wall synthesis. Teplyakov A, Obmolova G, Tordova M, Thanki N, Bonander N, Eisenstein E, Howard AJ, Gilliland GL. Proteins 48 220-226 (2002)
- DNA replication-coupled inactivation of DnaA protein in vitro: a role for DnaA arginine-334 of the AAA+ Box VIII motif in ATP hydrolysis. Su'etsugu M, Kawakami H, Kurokawa K, Kubota T, Takata M, Katayama T. Mol Microbiol 40 376-386 (2001)
- Disassembly of all SNARE complexes by N-ethylmaleimide-sensitive factor (NSF) is initiated by a conserved 1:1 interaction between α-soluble NSF attachment protein (SNAP) and SNARE complex. Vivona S, Cipriano DJ, O'Leary S, Li YH, Fenn TD, Brunger AT. J Biol Chem 288 24984-24991 (2013)
- Katanin Grips the β-Tubulin Tail through an Electropositive Double Spiral to Sever Microtubules. Zehr EA, Szyk A, Szczesna E, Roll-Mecak A. Dev Cell 52 118-131.e6 (2020)
- Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B. Inoue M, Kamikubo H, Kataoka M, Kato R, Yoshimori T, Wakatsuki S, Kawasaki M. Traffic 9 2180-2189 (2008)
- ATP-activated oligomerization as a mechanism for apoptosis regulation: fold and mechanism prediction for CED-4. Jaroszewski L, Rychlewski L, Reed JC, Godzik A. Proteins 39 197-203 (2000)
- ATPase activity of magnesium chelatase subunit I is required to maintain subunit D in vivo. Lake V, Olsson U, Willows RD, Hansson M. Eur J Biochem 271 2182-2188 (2004)
- Structural and enzymatic properties of the AAA protein Drg1p from Saccharomyces cerevisiae. Decoupling of intracellular function from ATPase activity and hexamerization. Zakalskiy A, Högenauer G, Ishikawa T, Wehrschütz-Sigl E, Wendler F, Teis D, Zisser G, Steven AC, Bergler H. J Biol Chem 277 26788-26795 (2002)
- Analysis of the mutant Drosophila N-ethylmaleimide sensitive fusion-1 protein in comatose reveals molecular correlates of the behavioural paralysis. Mohtashami M, Stewart BA, Boulianne GL, Trimble WS. J Neurochem 77 1407-1417 (2001)
- Genetic modifiers of the Drosophila NSF mutant, comatose, include a temperature-sensitive paralytic allele of the calcium channel alpha1-subunit gene, cacophony. Dellinger B, Felling R, Ordway RW. Genetics 155 203-211 (2000)
- The ATPase activity of BfpD is greatly enhanced by zinc and allosteric interactions with other Bfp proteins. Crowther LJ, Yamagata A, Craig L, Tainer JA, Donnenberg MS. J Biol Chem 280 24839-24848 (2005)
- Structure of VAT, a CDC48/p97 ATPase homologue from the archaeon Thermoplasma acidophilum as studied by electron tomography. Rockel B, Walz J, Hegerl R, Peters J, Typke D, Baumeister W. FEBS Lett 451 27-32 (1999)
- Three-dimensional electron microscopy of the clamp loader small subunit from Pyrococcus furiosus. Mayanagi K, Miyata T, Oyama T, Ishino Y, Morikawa K. J Struct Biol 134 35-45 (2001)
- Characterization of a conserved alpha-helical, coiled-coil motif at the C-terminal domain of the ATP-dependent FtsH (HflB) protease of Escherichia coli. Shotland Y, Teff D, Koby S, Kobiler O, Oppenheim AB. J Mol Biol 299 953-964 (2000)
- Electron cryo-microscopy of VAT, the archaeal p97/CDC48 homologue from Thermoplasma acidophilum. Rockel B, Jakana J, Chiu W, Baumeister W. J Mol Biol 317 673-681 (2002)
- Functions of sensor 1 and sensor 2 regions of Saccharomyces cerevisiae Cdc6p in vivo and in vitro. Takahashi N, Tsutsumi S, Tsuchiya T, Stillman B, Mizushima T. J Biol Chem 277 16033-16040 (2002)
- A link between sequence conservation and domain motion within the AAA+ family. Smith GR, Contreras-Moreira B, Zhang X, Bates PA. J Struct Biol 146 189-204 (2004)
- ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA+ transcriptional activator. Joly N, Zhang N, Buck M. Mol Cell 47 484-490 (2012)
- Evolution of proteasomal ATPases. Wollenberg K, Swaffield JC. Mol Biol Evol 18 962-974 (2001)
- Genetic interaction between shibire and comatose mutations in Drosophila suggest a role for snap-receptor complex assembly and disassembly for maintenance of synaptic vesicle cycling. Sanyal S, Tolar LA, Pallanck L, Krishnan KS. Neurosci Lett 311 21-24 (2001)
- Nucleotide-induced conformational changes in an isolated Escherichia coli DNA polymerase III clamp loader subunit. Podobnik M, Weitze TF, O'Donnell M, Kuriyan J. Structure 11 253-263 (2003)
- Regulation of ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) activase: product inhibition, cooperativity, and magnesium activation. Hazra S, Henderson JN, Liles K, Hilton MT, Wachter RM. J Biol Chem 290 24222-24236 (2015)
- The N-terminal coiled coil of the Rhodococcus erythropolis ARC AAA ATPase is neither necessary for oligomerization nor nucleotide hydrolysis. Zhang X, Stoffels K, Wurzbacher S, Schoofs G, Pfeifer G, Banerjee T, Parret AH, Baumeister W, De Mot R, Zwickl P. J Struct Biol 146 155-165 (2004)
- Biochemical coupling of the two nucleotide binding domains of ClpB: covalent linkage is not a prerequisite for chaperone activity. Beinker P, Schlee S, Auvula R, Reinstein J. J Biol Chem 280 37965-37973 (2005)
- Characterization of secretory genes ypt1/yptA and nsf1/nsfA from two filamentous fungi: induction of secretory pathway genes of Trichoderma reesei under secretion stress conditions. Saloheimo M, Wang H, Valkonen M, Vasara T, Huuskonen A, Riikonen M, Pakula T, Ward M, Penttilä M. Appl Environ Microbiol 70 459-467 (2004)
- A screen for dominant negative mutants of SEC18 reveals a role for the AAA protein consensus sequence in ATP hydrolysis. Steel GJ, Harley C, Boyd A, Morgan A. Mol Biol Cell 11 1345-1356 (2000)
- Structural dynamics of the MecA-ClpC complex: a type II AAA+ protein unfolding machine. Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N. J Biol Chem 288 17597-17608 (2013)
- Recombinant ATPases of the yeast 26S proteasome activate protein degradation by the 20S proteasome. Takeuchi J, Tamura T. FEBS Lett 565 39-42 (2004)
- Sensor I threonine of the AAA+ ATPase transcriptional activator PspF is involved in coupling nucleotide triphosphate hydrolysis to the restructuring of sigma 54-RNA polymerase. Schumacher J, Joly N, Rappas M, Bradley D, Wigneshweraraj SR, Zhang X, Buck M. J Biol Chem 282 9825-9833 (2007)
- Selective chemical inactivation of AAA proteins reveals distinct functions of proteasomal ATPases. Russell SJ, Gonzalez F, Joshua-Tor L, Johnston SA. Chem Biol 8 941-950 (2001)
- Striatal 19S Rpt6 deficit is related to alpha-synuclein accumulation in MPTP-treated mice. Liu B, Shi Q, Ma S, Feng N, Li J, Wang L, Wang X. Biochem Biophys Res Commun 376 277-282 (2008)
- Structure and function of the N-terminal nucleolin binding domain of nuclear valosin-containing protein-like 2 (NVL2) harboring a nucleolar localization signal. Fujiwara Y, Fujiwara K, Goda N, Iwaya N, Tenno T, Shirakawa M, Hiroaki H. J Biol Chem 286 21732-21741 (2011)
- The Neurexin/N-Ethylmaleimide-sensitive Factor (NSF) Interaction Regulates Short Term Synaptic Depression. Li T, Tian Y, Li Q, Chen H, Lv H, Xie W, Han J. J Biol Chem 290 17656-17667 (2015)
- Mechanism of homotropic control to coordinate hydrolysis in a hexameric AAA+ ring ATPase. Schumacher J, Joly N, Claeys-Bouuaert IL, Aziz SA, Rappas M, Zhang X, Buck M. J Mol Biol 381 1-12 (2008)
- Novel putative targets of N-ethylmaleimide sensitive fusion protein (NSF) and alpha/beta soluble NSF attachment proteins (SNAPs) include the Pak-binding nucleotide exchange factor betaPIX. Martin HG, Henley JM, Meyer G. J Cell Biochem 99 1203-1215 (2006)
- Phosphatidic acid induces conformational changes in Sec18 protomers that prevent SNARE priming. Starr ML, Sparks RP, Arango AS, Hurst LR, Zhao Z, Lihan M, Jenkins JL, Tajkhorshid E, Fratti RA. J Biol Chem 294 3100-3116 (2019)
- Spectrometric analysis of degradation of a physiological substrate sigma32 by Escherichia coli AAA protease FtsH. Okuno T, Yamada-Inagawa T, Karata K, Yamanaka K, Ogura T. J Struct Biol 146 148-154 (2004)
- Unique ATPase site architecture triggers cis-mediated synchronized ATP binding in heptameric AAA+-ATPase domain of flagellar regulatory protein FlrC. Dey S, Biswas M, Sen U, Dasgupta J. J Biol Chem 290 8734-8747 (2015)
- News A handle on NSF. Owen DJ, Schiavo G. Nat Cell Biol 1 E127-8 (1999)
- Catalytic turnover triggers exchange of subunits of the magnesium chelatase AAA+ motor unit. Lundqvist J, Braumann I, Kurowska M, Müller AH, Hansson M. J Biol Chem 288 24012-24019 (2013)
- A Missense Mutation in the NSF Gene Causes Abnormal Golgi Morphology in Arabidopsis thaliana. Tanabashi S, Shoda K, Saito C, Sakamoto T, Kurata T, Uemura T, Nakano A. Cell Struct Funct 43 41-51 (2018)
- A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6. Schmidt JM, Yang R, Kumar A, Hunker O, Seebacher J, Bleichert F. Nat Commun 13 1059 (2022)
- Neuromuscular synapse. Goodsell DS. Biochem Mol Biol Educ 37 204-210 (2009)
- Probing the structural dynamics of the SNARE recycling machine based on coarse-grained modeling. Zheng W. Proteins 84 1055-1066 (2016)
- Extreme parsimony in ATP consumption by 20S complexes in the global disassembly of single SNARE complexes. Kim C, Shon MJ, Kim SH, Eun GS, Ryu JK, Hyeon C, Jahn R, Yoon TY. Nat Commun 12 3206 (2021)
- Hypothesis: bacterial clamp loader ATPase activation through DNA-dependent repositioning of the catalytic base and of a trans-acting catalytic threonine. Neuwald AF. Nucleic Acids Res 34 5280-5290 (2006)
- Molecular determination by electron microscopy of the dynein-microtubule complex structure. Narita A, Mizuno N, Kikkawa M, Maéda Y. J Mol Biol 372 1320-1336 (2007)
- Rotary and unidirectional metal shadowing of VAT: localization of the substrate-binding domain. Rockel B, Guckenberger R, Gross H, Tittmann P, Baumeister W. J Struct Biol 132 162-168 (2000)
- Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system. Fung HKH, Grimes S, Huet A, Duda RL, Chechik M, Gault J, Robinson CV, Hendrix RW, Jardine PJ, Conway JF, Baumann CG, Antson AA. Nucleic Acids Res 50 8719-8732 (2022)
- Identification of a Manduca sexta NSF ortholog, a member of the AAA family of ATPases. Pullikuth AK, Gill SS. Gene 240 343-354 (1999)
- Identification of intragenic mutations in the Hansenula polymorpha PEX6 gene that affect peroxisome biogenesis and methylotrophic growth. Stasyk OV, Nazarko VY, Pochapinsky OD, Nazarko TY, Veenhuis M, Sibirny AA. FEMS Yeast Res 4 141-147 (2003)
- Autoinhibition of a clamp-loader ATPase revealed by deep mutagenesis and cryo-EM. Marcus K, Huang Y, Subramanian S, Gee CL, Gorday K, Ghaffari-Kashani S, Luo XR, Zheng L, O'Donnell M, Subramaniam S, Kuriyan J. Nat Struct Mol Biol (2024)