› 1c8f

X-ray diffraction
3Å resolution

FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Released:
DOI: 10.2210/pdb1c8f/pdb
PDB 1c8f coloured by chain and viewed from the front.
PDB 1c8f coloured by chain and viewed from the side.
PDB 1c8f coloured by chain and viewed from the top.
Source organism: Feline panleukopenia virus
Primary publication:
Host range and variability of calcium binding by surface loops in the capsids of canine and feline parvoviruses.
Simpson AA, Chandrasekar V, Hébert B, Sullivan GM, Rossmann MG, Parrish CR
J Mol Biol 300 597-610 (2000)
PMID: 10884355

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
homo 60-mer (preferred)
monomeric
homo pentamer
homo hexamer
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 548 amino acids
Theoretical weight: 61.62 KDa
Source organism: Feline panleukopenia virus
UniProt:
  • Canonical: P24840 (Residues: 180-727; Coverage: 75%)
Structure domains: Parvovirus coat protein VP1/VP2

Ligands and Environments

1 bound ligand:
Ligand CA 3 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: P212121
Unit cell:
a: 380.12Å b: 379.25Å c: 350.82Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.285 0.285 not available

Quick links

Citations

7 review citations

Virus Isoelectric Point Estimation: Theories and Methods.
Heffron et al. (2021)
6 more

6 mentions without citation

Viral calciomics: interplays between Ca2+ and virus.
Zhou et al. (2009)
5 more