› 1ayj

Solution NMR

DETERMINATION OF THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF RAPHANUS SATIVUS ANTIFUNGAL PROTEIN 1 (RS-AFP1) BY 1H NMR, 20 STRUCTURES

Released:
DOI: 10.2210/pdb1ayj/pdb
PDB 1ayj coloured by chain and viewed from the front.
PDB 1ayj coloured by chain and viewed from the side.
PDB 1ayj coloured by chain and viewed from the top.
Source organism: Raphanus sativus var. niger
Primary publication:
Determination of the three-dimensional solution structure of Raphanus sativus antifungal protein 1 by 1H NMR.
Fant F, Vranken W, Broekaert W, Borremans F
J. Mol. Biol. 279 257-70 (1998)
PMID: 9636715

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Defensin-like protein 1 Chain: A
Molecule details ›
Chain: A
Length: 51 amino acids
Theoretical weight: 5.69 KDa
Source organism: Raphanus sativus var. niger
UniProt:
  • Canonical: P69241 (Residues: 30-80; Coverage: 100%)
Gene name: AFP1
Sequence domains: Gamma-thionin family
Structure domains: Knottin, scorpion toxin-like

Ligands and Environments

No bound ligands
1 modified residue:
Ligand PCA 1 x PCA

Experiments and Validation Details

Entry percentile scores
Refinement method: DIANA AND SIMULATED ANNEALING

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Citations

12 review citations

Gametophytic Pollen Tube Guidance: Attractant Peptides, Gametic Controls, and Receptors.
Higashiyama et al. (2017)
11 more

10 mentions without citation

Medicinal Potentialities of Plant Defensins: A Review with Applied Perspectives.
Ishaq et al. (2019)
9 more