1a3r

X-ray diffraction
2.1Å resolution

FAB FRAGMENT (ANTIBODY 8F5) COMPLEXED WITH PEPTIDE FROM HUMAN RHINOVIRUS (SEROTYPE 2) VIRAL CAPSID PROTEIN VP2 (RESIDUES 156-170)

Released:

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
Selective cleavage of Tyr-|-Gly bond in picornavirus polyprotein.
NTP + H(2)O = NDP + phosphate
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-138281 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Ig-like domain-containing protein Chain: L
Molecule details ›
Chain: L
Length: 220 amino acids
Theoretical weight: 24.42 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q52L64 (Residues: 21-240; Coverage: 100%)
Gene names: Gm10883, Igkv8-30
Sequence domains:
Structure domains: Immunoglobulins
Ig-like domain-containing protein Chain: H
Molecule details ›
Chain: H
Length: 218 amino acids
Theoretical weight: 23.59 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q505N9 (Residues: 20-126, 127-238; Coverage: 48%)
Gene name: Igh
Sequence domains:
Structure domains: Immunoglobulins
Capsid protein VP2 Chain: P
Molecule details ›
Chain: P
Length: 16 amino acids
Theoretical weight: 1.71 KDa
Source organism: rhinovirus A2
UniProt:
  • Canonical: P04936 (Residues: 225-239; Coverage: 1%)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X11
Spacegroup: P212121
Unit cell:
a: 71.79Å b: 76.32Å c: 92.32Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.171 0.171 not available