1zcc

X-ray diffraction
2.5Å resolution

Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
GP-PDE domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 248 amino acids
Theoretical weight: 27.36 KDa
Source organism: Agrobacterium fabrum str. C58
Expression system: Escherichia coli
UniProt:
  • Canonical: A9CG82 (Residues: 1-248; Coverage: 100%)
Gene names: Atu4212, ugpQ
Sequence domains: Glycerophosphoryl diester phosphodiesterase family
Structure domains: Phosphatidylinositol (PI) phosphodiesterase

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25, NSLS BEAMLINE X12C
Spacegroup: P21
Unit cell:
a: 78.56Å b: 140.22Å c: 88.6Å
α: 90° β: 90.53° γ: 90°
R-values:
R R work R free
0.244 0.244 0.281
Expression system: Escherichia coli