X-ray diffraction
1.6Å resolution

Function and Biology Details

Reaction catalysed:
A glycerophosphodiester + H(2)O = an alcohol + sn-glycerol 3-phosphate
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
GP-PDE domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 234 amino acids
Theoretical weight: 27.17 KDa
Source organism: Thermotoga maritima
Expression system: Escherichia coli
  • Canonical: Q9X1V6 (Residues: 1-222; Coverage: 100%)
Gene name: TM_1621
Sequence domains: Glycerophosphoryl diester phosphodiesterase family
Structure domains: Phosphatidylinositol (PI) phosphodiesterase

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P21212
Unit cell:
a: 132.41Å b: 41.79Å c: 51.72Å
α: 90° β: 90° γ: 90°
R R work R free
0.141 0.139 0.18
Expression system: Escherichia coli