› 1jgj

X-ray diffraction
2.4Å resolution

CRYSTAL STRUCTURE OF SENSORY RHODOPSIN II AT 2.4 ANGSTROMS: INSIGHTS INTO COLOR TUNING AND TRANSDUCER INTERACTION

Released:
DOI: 10.2210/pdb1jgj/pdb
PDB entry 1jgj coloured by chain, front view.
PDB entry 1jgj coloured by chain, side view.
PDB entry 1jgj coloured by chain, top view.
Source organism: Natronomonas pharaonis
Primary publication:
Crystal structure of sensory rhodopsin II at 2.4 angstroms: insights into color tuning and transducer interaction.
Luecke H, Schobert B, Lanyi JK, Spudich EN, Spudich JL
Science 293 1499-503 (2001)
PMID: 11452084

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-154502 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Sensory rhodopsin-2 Chain: A
Molecule details ›
Chain: A
Length: 217 amino acids
Theoretical weight: 23.18 KDa
Source organism: Natronomonas pharaonis
Expression system: Natronomonas pharaonis
UniProt:
  • Canonical: P42196 (Residues: 1-217; Coverage: 91%)
Gene names: sop2, sopII
Sequence domains: Bacteriorhodopsin-like protein
Structure domains: Rhodopsin 7-helix transmembrane proteins

Ligands and Environments

2 bound ligands:
Ligand BOG 1 x BOG
Ligand RET 1 x RET
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID13
Spacegroup: C2221
Unit cell:
a: 87.34Å b: 130.81Å c: 50.87Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.233 0.233 0.28
Expression system: Natronomonas pharaonis

Quick links

Citations

48 review citations

Targeting and readout strategies for fast optical neural control in vitro and in vivo.
Gradinaru et al. (2007)
47 more

36 mentions without citation

Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.
Ernst et al. (2014)
35 more