EMD-9777

Single-particle
3.8 Å
EMD-9777 Deposition: 07/01/2019
Map released: 07/08/2019
Last modified: 06/11/2019
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-9777

Structure of C2S2M2-type PSII-FCPII supercomplex from diatom

EMD-9777

Single-particle
3.8 Å
EMD-9777 Deposition: 07/01/2019
Map released: 07/08/2019
Last modified: 06/11/2019
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Name: C2S2M2-type PSII-FCPII supercomplex
Summary:
Complex [1]
Name: C2S2M2-type PSII-FCPII supercomplex
Natural source [1]
Molecular weight
Experimental Theoretical Method
- 1 MDa -
Protein [28]
Name: Photosystem II reaction center protein D1
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 38 kDa -
Name: Photosystem II chlorophyll protein CP47
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 56 kDa -
Name: Photosystem II chlorophyll protein CP43
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 51 kDa -
Name: Photosystem II reaction center protein D2
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 39 kDa -
Name: Cytochrome b559 subunit alpha
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: Cytochrome b559 subunit beta
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 4 kDa -
Name: Photosystem II reaction center protein H
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Molecular weight
Experimental Theoretical Method
- 7 kDa -
Name: Photosystem II reaction center protein I
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 4 kDa -
Name: Photosystem II reaction center protein J
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 4 kDa -
Name: Photosystem II reaction center protein K
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 4 kDa -
Name: Photosystem II reaction center protein L
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 4 kDa -
Name: Photosystem II reaction center protein M
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: Extrinsic protein in photosystem II
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [3]
Natural source
Molecular weight
Experimental Theoretical Method
- 26 kDa -
Name: Photosystem II reaction center protein T
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 3 kDa -
Name: Extrinsic protein in photosystem II
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 10 kDa -
Name: Cytochrome c-550
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: Photosystem II reaction center protein Ycf12
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 3 kDa -
Name: Photosystem II reaction center X protein
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [4]
Natural source
Molecular weight
Experimental Theoretical Method
- 3 kDa -
Name: Photosystem II reaction center protein Z
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 6 kDa -
Name: Extrinsic protein in photosystem II
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 17 kDa -
Name: Photosystem II reaction center protein W
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 7 kDa -
Name: Unknown protein 0
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 2 kDa -
Name: Unknown protein 1
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 2 kDa -
Name: Unknown protein 2
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 869 Da -
Name: Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1
Number of copies: 16
Natural source
Molecular weight
Experimental Theoretical Method
- 22 kDa -
Name: Fucoxanthin chlorophyll a/c-binding protein monomer 1
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 18 kDa -
Name: Fucoxanthin chlorophyll a/c-binding protein monomer 2
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 12 kDa -
Name: Fucoxanthin chlorophyll a/c-binding protein monomer 3
Number of copies: 2
Natural source
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Ligand [14]
Name: FE (II) ION
HET code: FE2
Number of copies: 2
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 55 Da -
Name: CHLOROPHYLL A
HET code: CLA
Number of copies: 290
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 893 Da -
Name: PHEOPHYTIN A
HET code: PHO
Number of copies: 4
ChEMBL ChEBI
Molecular weight
Experimental Theoretical Method
- 871 Da -
Name: BETA-CAROTENE
HET code: BCR
Number of copies: 24
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 536 Da -
Name: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
HET code: SQD
Number of copies: 6
ChEMBL
Molecular weight
Experimental Theoretical Method
- 795 Da -
Name: BICARBONATE ION
HET code: BCT
Number of copies: 2
ChEBI
Molecular weight
Experimental Theoretical Method
- 61 Da -
Name: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
HET code: LHG
Number of copies: 8
ChEBI
Molecular weight
Experimental Theoretical Method
- 722 Da -
Name: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
HET code: LMG
Number of copies: 14
Molecular weight
Experimental Theoretical Method
- 787 Da -
Name: CA-MN4-O5 CLUSTER
HET code: OEX
Number of copies: 2
ChEBI
Molecular weight
Experimental Theoretical Method
- 339 Da -
Name: DIGALACTOSYL DIACYL GLYCEROL (DGDG)
HET code: DGD
Number of copies: 8
DrugBank
Molecular weight
Experimental Theoretical Method
- 949 Da -
Name: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
HET code: PL9
Number of copies: 4
Molecular weight
Experimental Theoretical Method
- 749 Da -
Name: PROTOPORPHYRIN IX CONTAINING FE
HET code: HEM
Number of copies: 4
ChEBI
Molecular weight
Experimental Theoretical Method
- 616 Da -
Name: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate
HET code: A86
Number of copies: 118
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 658 Da -
Name: DODECYL-ALPHA-D-MALTOSIDE
HET code: LMU
Number of copies: 2
ChEMBL DrugBank
Molecular weight
Experimental Theoretical Method
- 510 Da -