EMD-9578

Single-particle
3.9 Å
EMD-9578 Deposition: 20/07/2018
Map released: 12/06/2019
Last modified: 12/02/2020
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-9578

Structure of influenza D virus polymerase bound to vRNA promoter in mode A conformation (class A1)

EMD-9578

Single-particle
3.9 Å
EMD-9578 Deposition: 20/07/2018
Map released: 12/06/2019
Last modified: 12/02/2020
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Method: Single-particle
Aggregation State: Particle
Specimen preparation [1]
Concentration: 0.8 mg/mL
Buffer
pH: 7.5
Vitrification
Cryogen name: ETHANE
Chamber humidity: 100%
Chamber temperature: 277 K
Instrument: FEI VITROBOT MARK IV
Microscopy [1]
Microscope: FEI TITAN KRIOS
Illumination mode: FLOOD BEAM
Imaging mode: BRIGHT FIELD
Electron source: FIELD EMISSION GUN
Acceleration voltage: 300 kV
Specimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER
Cooling holder cryogen: NITROGEN
Alignment procedure: COMA FREE
Image Recording [1]
Detector model: GATAN K2 QUANTUM (4k x 4k)
Detector mode: SUPER-RESOLUTION
Average electron dose per image: 60.0 e/Å2
Image processing [1]
Final reconstruction
Resolution: 3.9 Å ( BY AUTHOR)
Resolution method: FSC 0.143 CUT-OFF
Number of images used: 134404
Algorithm: FOURIER SPACE
Applied Symmetry
Point group: C1
Software [1]
Name Version Details
RELION 2.0 -
Startup model [1]
Type: PDB ENTRY
PDB model: 6AB7
Details:Influenza D virus apo plolymerase
Initial angle assignment
Type: MAXIMUM LIKELIHOOD
Software [1]
Name Version Details
RELION 2.0 -
Final angle assignment
Type: MAXIMUM LIKELIHOOD
Software [1]
Name Version Details
RELION 2.0 -
Final 3D classification
Software [1]
Name Version Details
RELION 2.0 -
CTF correction
Software [1]
Name Version Details
CTFFIND 4.1 -
Map
Format: CCP4
Data type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Annotation details: Influenza D virus polymerase bound to vRNA promoter in mode A (class A1)
Geometry
X Y Z
Dimensions 180 180 180
Origin 0 0 0
Spacing 180 180 180
Voxel size 1.36 Å 1.36 Å 1.36 Å
Contour list
Primary Level Source
True 0.02 AUTHOR