EMD-4884
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
EMD-4884
Single-particle3.3 Å
Deposition: 23/04/2019
Map released: 26/06/2019
Last modified: 10/07/2019
Name: Lsg1-TAP 60s ribosomal subunit
Summary:
- Complex
- RNA
- Protein
- 60S ribosomal protein L2-A
- 60S ribosomal protein L3
- 60S ribosomal protein L4-A
- 60S ribosomal protein L11-A
- 60S ribosomal protein L9-A
- 60S ribosomal protein L6-A
- 60S ribosomal protein L8-A
- 60S ribosomal protein L16-B
- 60S ribosomal protein L13-A
- 60S ribosomal protein L23-A
- 60S ribosomal protein L14-A
- 60S ribosomal protein L28
- 60S ribosomal protein L15-A
- 60S ribosomal protein L5
- 60S ribosomal protein L18-A
- 60S ribosomal protein L19-A
- 60S ribosomal protein L20-A
- 60S ribosomal protein L21-A
- 60S ribosomal protein L17-A
- 60S ribosomal protein L22-A
- 60S ribosomal protein L25
- 60S ribosomal protein L26-A
- 60S ribosomal protein L27-A
- 60S ribosomal protein L35-A
- 60S ribosomal protein L29
- 60S ribosomal protein L7-A
- 60S ribosomal protein L30
- 60S ribosomal protein L31-A
- 60S ribosomal protein L32
- 60S ribosomal protein L33-A
- 60S ribosomal protein L34-A
- 60S ribosomal protein L36-A
- 60S ribosomal protein L37-A
- 60S ribosomal protein L38
- 60S ribosomal protein L39
- 60S ribosomal protein L42-A
- 60S ribosomal protein L43-A
- Eukaryotic translation initiation factor 6
- Cytoplasmic 60S subunit biogenesis factor REH1
- 60S ribosomal export protein NMD3
- 60S ribosomal protein L24-A
- Large subunit GTPase 1
- uL1
- 60S ribosomal protein L10
- Ubiquitin-60S ribosomal protein L40
- Ligand
Name:
25S RNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 1 MDa | - |
5S rRNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Saccharomyces cerevisiae
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 38 kDa | - |
5.8S rRNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Saccharomyces cerevisiae
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 50 kDa | - |
60S ribosomal protein L2-A
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation
Molecular function:
RNA binding rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
cytoplasmic translation
Molecular function:
RNA binding rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 27 kDa | - |
60S ribosomal protein L3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
translation cytoplasmic translation ribosomal large subunit assembly rRNA processing maintenance of translational fidelity
Molecular function:
structural constituent of ribosome RNA binding
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
translation cytoplasmic translation ribosomal large subunit assembly rRNA processing maintenance of translational fidelity
Molecular function:
structural constituent of ribosome RNA binding
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 43 kDa | - |
60S ribosomal protein L4-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
nucleus cytosol cytosolic large ribosomal subunit
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
nucleus cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 39 kDa | - |
60S ribosomal protein L11-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
ribosomal large subunit assembly cytoplasmic translation
Molecular function:
rRNA binding RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit nucleus
ribosomal large subunit assembly cytoplasmic translation
Molecular function:
rRNA binding RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit nucleus
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 19 kDa | - |
60S ribosomal protein L9-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
cytoplasmic translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 21 kDa | - |
60S ribosomal protein L6-A
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation ribosomal large subunit assembly
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
cytoplasmic translation ribosomal large subunit assembly
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 20 kDa | - |
60S ribosomal protein L8-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation maturation of LSU-rRNA
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
cytoplasmic translation maturation of LSU-rRNA
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 28 kDa | - |
60S ribosomal protein L16-B
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation negative regulation of translation
Molecular function:
structural constituent of ribosome mRNA binding RNA binding
Cellular location:
ribosome cytosol cytosolic large ribosomal subunit
cytoplasmic translation negative regulation of translation
Molecular function:
structural constituent of ribosome mRNA binding RNA binding
Cellular location:
ribosome cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 22 kDa | - |
60S ribosomal protein L13-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 22 kDa | - |
60S ribosomal protein L23-A
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation
Molecular function:
structural constituent of ribosome large ribosomal subunit rRNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit
cytoplasmic translation
Molecular function:
structural constituent of ribosome large ribosomal subunit rRNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
60S ribosomal protein L14-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
ribosomal large subunit biogenesis cytoplasmic translation macroautophagy
Molecular function:
structural constituent of ribosome RNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit
ribosomal large subunit biogenesis cytoplasmic translation macroautophagy
Molecular function:
structural constituent of ribosome RNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
60S ribosomal protein L28
Number of copies: 1
Details: MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRY FHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPN VPVIVKARFVSKLAEEKIRAAGGVVELIA
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
Details: MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRY FHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPN VPVIVKARFVSKLAEEKIRAAGGVVELIA
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytoplasm nucleus cytosolic large ribosomal subunit cytosol
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytoplasm nucleus cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 16 kDa | - |
60S ribosomal protein L15-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 24 kDa | - |
60S ribosomal protein L5
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
ribosomal large subunit assembly cytoplasmic translation
Molecular function:
5S rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit nucleus
ribosomal large subunit assembly cytoplasmic translation
Molecular function:
5S rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit nucleus
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 33 kDa | - |
60S ribosomal protein L18-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 20 kDa | - |
60S ribosomal protein L19-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 21 kDa | - |
60S ribosomal protein L20-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [4]
Biological process:
cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 20 kDa | - |
60S ribosomal protein L21-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [4]
Biological process:
cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 18 kDa | - |
60S ribosomal protein L17-A
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol preribosome, large subunit precursor cytosolic large ribosomal subunit cytoplasm
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol preribosome, large subunit precursor cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 20 kDa | - |
60S ribosomal protein L22-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
60S ribosomal protein L25
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
ribosomal large subunit assembly cytoplasmic translation
Molecular function:
rRNA binding RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit preribosome, large subunit precursor
ribosomal large subunit assembly cytoplasmic translation
Molecular function:
rRNA binding RNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit preribosome, large subunit precursor
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
60S ribosomal protein L26-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation ribosomal large subunit biogenesis
Molecular function:
structural constituent of ribosome RNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit
cytoplasmic translation ribosomal large subunit biogenesis
Molecular function:
structural constituent of ribosome RNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
60S ribosomal protein L27-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [4]
Biological process:
cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
60S ribosomal protein L35-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Molecular function:
structural constituent of ribosome mRNA binding
Cellular location:
preribosome, large subunit precursor cytosolic large ribosomal subunit cytosol
cytoplasmic translation maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Molecular function:
structural constituent of ribosome mRNA binding
Cellular location:
preribosome, large subunit precursor cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
60S ribosomal protein L29
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 6 kDa | - |
60S ribosomal protein L7-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of LSU-rRNA ribosomal large subunit biogenesis cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of LSU-rRNA ribosomal large subunit biogenesis cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 27 kDa | - |
60S ribosomal protein L30
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
rRNA processing negative regulation of mRNA splicing, via spliceosome cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome pre-mRNA 5'-splice site binding
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm
rRNA processing negative regulation of mRNA splicing, via spliceosome cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome pre-mRNA 5'-splice site binding
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
60S ribosomal protein L31-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation regulation of translational fidelity
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
cytoplasmic translation regulation of translational fidelity
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
60S ribosomal protein L32
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
60S ribosomal protein L33-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
ribosomal large subunit biogenesis cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
ribosomal large subunit biogenesis cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
60S ribosomal protein L34-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
60S ribosomal protein L36-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation
Molecular function:
structural constituent of ribosome RNA binding
Cellular location:
cytosolic large ribosomal subunit cytosol
cytoplasmic translation
Molecular function:
structural constituent of ribosome RNA binding
Cellular location:
cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
60S ribosomal protein L37-A
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Molecular function:
rRNA binding RNA binding structural constituent of ribosome metal ion binding
Cellular location:
cytosol cytosolic large ribosomal subunit preribosome, large subunit precursor
cytoplasmic translation cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Molecular function:
rRNA binding RNA binding structural constituent of ribosome metal ion binding
Cellular location:
cytosol cytosolic large ribosomal subunit preribosome, large subunit precursor
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
60S ribosomal protein L38
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
protein-RNA complex assembly ribonucleoprotein complex assembly cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
protein-RNA complex assembly ribonucleoprotein complex assembly cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 8 kDa | - |
60S ribosomal protein L39
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 6 kDa | - |
60S ribosomal protein L42-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
response to cycloheximide response to antibiotic cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
response to cycloheximide response to antibiotic cytoplasmic translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
60S ribosomal protein L43-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
Eukaryotic translation initiation factor 6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [18]
Biological process:
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cytosolic ribosome assembly mature ribosome assembly maturation of 5.8S rRNA maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal large subunit biogenesis ribosomal subunit export from nucleus rRNA processing assembly of large subunit precursor of preribosome maturation of LSU-rRNA
Molecular function:
translation initiation factor activity ribosome binding ribosomal large subunit binding
Cellular location:
cytoplasm nucleus preribosome, large subunit precursor nucleolus cytosol
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cytosolic ribosome assembly mature ribosome assembly maturation of 5.8S rRNA maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal large subunit biogenesis ribosomal subunit export from nucleus rRNA processing assembly of large subunit precursor of preribosome maturation of LSU-rRNA
Molecular function:
translation initiation factor activity ribosome binding ribosomal large subunit binding
Cellular location:
cytoplasm nucleus preribosome, large subunit precursor nucleolus cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 26 kDa | - |
Cytoplasmic 60S subunit biogenesis factor REH1
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [4]
Biological process:
ribosomal large subunit biogenesis
Molecular function:
metal ion binding
Cellular location:
preribosome, large subunit precursor cytoplasm
ribosomal large subunit biogenesis
Molecular function:
metal ion binding
Cellular location:
preribosome, large subunit precursor cytoplasm
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 49 kDa | - |
60S ribosomal export protein NMD3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
ribosomal large subunit export from nucleus protein transport
Molecular function:
large ribosomal subunit rRNA binding ribosomal large subunit binding
Cellular location:
nucleoplasm nucleus cytosol cytoplasm
ribosomal large subunit export from nucleus protein transport
Molecular function:
large ribosomal subunit rRNA binding ribosomal large subunit binding
Cellular location:
nucleoplasm nucleus cytosol cytoplasm
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 59 kDa | - |
60S ribosomal protein L24-A
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome mRNA binding
Cellular location:
cytosolic large ribosomal subunit cytosol
cytoplasmic translation
Molecular function:
RNA binding structural constituent of ribosome mRNA binding
Cellular location:
cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 17 kDa | - |
Large subunit GTPase 1
EC number: 3.6.1.-
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: EC number: 3.6.1.-
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
protein transport ribosomal large subunit assembly ribosomal subunit export from nucleus
Molecular function:
GTP binding GTPase activity mRNA binding
Cellular location:
mating projection tip cytoplasm cytosolic large ribosomal subunit cytosol
protein transport ribosomal large subunit assembly ribosomal subunit export from nucleus
Molecular function:
GTP binding GTPase activity mRNA binding
Cellular location:
mating projection tip cytoplasm cytosolic large ribosomal subunit cytosol
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 72 kDa | - |
uL1
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Saccharomyces cerevisiae
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 17 kDa | - |
60S ribosomal protein L10
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translational termination ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
cytoplasmic translation translational termination ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 25 kDa | - |
Ubiquitin-60S ribosomal protein L40
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [14]
Biological process:
modification-dependent protein catabolic process ribosome biogenesis protein ubiquitination ribosomal large subunit export from nucleus cytoplasmic translation ribosomal large subunit assembly
Molecular function:
protein tag activity protein tag structural constituent of ribosome ubiquitin protein ligase binding
Cellular location:
nucleus cytosol cytoplasm cytosolic large ribosomal subunit
modification-dependent protein catabolic process ribosome biogenesis protein ubiquitination ribosomal large subunit export from nucleus cytoplasmic translation ribosomal large subunit assembly
Molecular function:
protein tag activity protein tag structural constituent of ribosome ubiquitin protein ligase binding
Cellular location:
nucleus cytosol cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Baker's yeast
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |