EMD-20041

Single-particle
3.0 Å
EMD-20041
3D View Gallery
Deposition: 28/03/2019
Map released: 11/09/2019
Last modified: 20/03/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-20041
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3D volume (map.gz) Experimental metadata (xml) Experimental Metadata (cif.gz)
Map-only Validation report (pdf.gz) Map-only Validation report (cif.gz) Map-only Validation report (xml.gz)
Map and PDB model 6of3 summary report (pdf.gz) Map and 6of3 FULL report (pdf.gz)
EMICSS annotations (xml)

Precursor ribosomal RNA processing complex, State 1.

EMD-20041

Single-particle
3.0 Å
EMD-20041
3D View Gallery
Deposition: 28/03/2019
Map released: 11/09/2019
Last modified: 20/03/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Name: Precursor Ribosomal RNA Processing Complex
Complex [1]
Name: Precursor Ribosomal RNA Processing Complex
Details: Precursor Ribosomal RNA Processing Complex coordinates removal of a transcribed spacer.
Natural source [1]
Organism: Chaetomium thermophilum
Molecular weight
Experimental Theoretical Method
- 234 kDa -
Protein [2]
LEVO
Name: Ribonuclease
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [3]
Biological process:
rRNA processing
Molecular function:
endonuclease activity
Cellular location:
Las1 complex
Natural source
Organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Strain: DSM 1495 / CBS 144.50 / IMI 039719
Molecular weight
Experimental Theoretical Method
- 43 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli - - -
LEVO
Name: CLP1_P domain-containing protein
Number of copies: 2
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [2]
Biological process:
RNA processing
Molecular function:
polynucleotide 5'-hydroxyl-kinase activity
Natural source
Organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Strain: DSM 1495 / CBS 144.50 / IMI 039719
Molecular weight
Experimental Theoretical Method
- 69 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli - - -
Ligand [2]
Name: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
HET code: AGS
Number of copies: 2
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 523 Da -
Name: MAGNESIUM ION
HET code: MG
Number of copies: 2
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 24 Da -