EMD-11423
E. coli 70S-RNAP expressome complex in uncoupled state 6
EMD-11423
Single-particle3.0 Å
Deposition: 20/07/2020
Map released: 16/09/2020
Last modified: 23/09/2020
Name: Uncoupled E. coli expressome, state 6
Summary:
- Complex
- Uncoupled E. coli expressome, state 6
- 70S ribosome within the uncoupled E. coli expressome, state 6
- DNA-directed RNA polymerase within the uncoupled E. coli expressome, state 6
- synthetic mRNA and template DNA strands
- RNA
- Protein
- 30S ribosomal protein S2
- 30S ribosomal protein S3
- 30S ribosomal protein S4
- 30S ribosomal protein S5
- 30S ribosomal protein S6
- 30S ribosomal protein S7
- 30S ribosomal protein S8
- 30S ribosomal protein S9
- 30S ribosomal protein S10
- 30S ribosomal protein S11
- 30S ribosomal protein S12
- 30S ribosomal protein S13
- 30S ribosomal protein S14
- 30S ribosomal protein S15
- 30S ribosomal protein S16
- 30S ribosomal protein S17
- 30S ribosomal protein S18
- 30S ribosomal protein S19
- 30S ribosomal protein S20
- 30S ribosomal protein S21
- 50S ribosomal protein L2
- 50S ribosomal protein L3
- 50S ribosomal protein L4
- 50S ribosomal protein L5
- 50S ribosomal protein L6
- 50S ribosomal protein L9
- 50S ribosomal protein L13
- 50S ribosomal protein L14
- 50S ribosomal protein L15
- 50S ribosomal protein L16
- 50S ribosomal protein L17
- 50S ribosomal protein L18
- 50S ribosomal protein L19
- 50S ribosomal protein L20
- 50S ribosomal protein L21
- 50S ribosomal protein L22
- 50S ribosomal protein L23
- 50S ribosomal protein L24
- 50S ribosomal protein L25
- 50S ribosomal protein L27
- 50S ribosomal protein L28
- 50S ribosomal protein L29
- 50S ribosomal protein L30
- 50S ribosomal protein L32
- 50S ribosomal protein L33
- 50S ribosomal protein L34
- 50S ribosomal protein L35
- 50S ribosomal protein L36
- 50S ribosomal protein L31
- DNA-directed RNA polymerase subunit alpha
- DNA-directed RNA polymerase subunit beta
- DNA-directed RNA polymerase subunit beta'
- DNA-directed RNA polymerase subunit omega
- DNA
- Ligand
Uncoupled E. coli expressome, state 6
Name: Complex Portal [1]
ID | Name | Overlap |
---|---|---|
CPX-3807 | 50S large ribosomal subunit | 0.51 |
70S ribosome within the uncoupled E. coli expressome, state 6
Name: Natural source [1]
Organism: Escherichia coli
Complex Portal [1]
ID | Name | Overlap |
---|---|---|
CPX-3807 | 50S large ribosomal subunit | 0.54 |
DNA-directed RNA polymerase within the uncoupled E. coli expressome, state 6
Name: Natural source [1]
Organism: Escherichia coli
Recombinant Expression [1]
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | pEcrpoABC(-XH)Z |
Complex Portal [7]
synthetic mRNA and template DNA strands
Name: Natural source [1]
Organism: synthetic construct
Recombinant Expression [1]
Organism | Strain | Cell | Plasmid |
---|---|---|---|
synthetic construct | - | - | - |
16S ribosomal RNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 499 kDa | - |
mRNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: synthetic construct
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 17 kDa | - |
tRNA(fmet) P-site
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 24 kDa | - |
Phe-NH-tRNA(Phe) A-site
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 24 kDa | - |
23S ribosomal RNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 941 kDa | - |
5S ribosomal RNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 38 kDa | - |
30S ribosomal protein S2
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
ribosomal small subunit assembly cytoplasmic translation translation
Molecular function:
zinc ion binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytoplasm small ribosomal subunit
ribosomal small subunit assembly cytoplasmic translation translation
Molecular function:
zinc ion binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytoplasm small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 26 kDa | - |
30S ribosomal protein S3
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation ribosomal small subunit assembly translation
Molecular function:
rRNA binding structural constituent of ribosome mRNA binding
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
cytoplasmic translation ribosomal small subunit assembly translation
Molecular function:
rRNA binding structural constituent of ribosome mRNA binding
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 26 kDa | - |
30S ribosomal protein S4
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [17]
Biological process:
negative regulation of translational initiation DNA-templated transcription termination maintenance of translational fidelity response to antibiotic cytoplasmic translation transcription antitermination ribosomal small subunit biogenesis ribosomal small subunit assembly translation
Molecular function:
mRNA regulatory element binding translation repressor activity mRNA 5'-UTR binding structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytosolic small ribosomal subunit small ribosomal subunit cytoplasm
negative regulation of translational initiation DNA-templated transcription termination maintenance of translational fidelity response to antibiotic cytoplasmic translation transcription antitermination ribosomal small subunit biogenesis ribosomal small subunit assembly translation
Molecular function:
mRNA regulatory element binding translation repressor activity mRNA 5'-UTR binding structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytosolic small ribosomal subunit small ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 23 kDa | - |
30S ribosomal protein S5
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [11]
Biological process:
maintenance of translational fidelity cytoplasmic translation ribosomal small subunit assembly response to antibiotic translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytosol small ribosomal subunit cytoplasm
maintenance of translational fidelity cytoplasmic translation ribosomal small subunit assembly response to antibiotic translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytosol small ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 17 kDa | - |
30S ribosomal protein S6
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [11]
Biological process:
cytoplasmic translation translation
Molecular function:
mRNA 5'-UTR binding small ribosomal subunit rRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytosolic small ribosomal subunit ribonucleoprotein complex ribosome cytoplasm
cytoplasmic translation translation
Molecular function:
mRNA 5'-UTR binding small ribosomal subunit rRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytosolic small ribosomal subunit ribonucleoprotein complex ribosome cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
30S ribosomal protein S7
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [2]
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 17 kDa | - |
30S ribosomal protein S8
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
regulation of mRNA stability regulation of translation cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
regulation of mRNA stability regulation of translation cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
30S ribosomal protein S9
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
RNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
RNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
30S ribosomal protein S10
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [14]
Biological process:
cytoplasmic translation transcription antitermination ribosome biogenesis regulation of DNA-templated transcription elongation ribosomal small subunit assembly translation
Molecular function:
transcription antitermination factor activity, RNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm transcription elongation factor complex small ribosomal subunit cytosolic small ribosomal subunit
cytoplasmic translation transcription antitermination ribosome biogenesis regulation of DNA-templated transcription elongation ribosomal small subunit assembly translation
Molecular function:
transcription antitermination factor activity, RNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm transcription elongation factor complex small ribosomal subunit cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
30S ribosomal protein S11
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
small ribosomal subunit rRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
small ribosomal subunit rRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
30S ribosomal protein S12
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [16]
Biological process:
maintenance of translational fidelity Group I intron splicing response to antibiotic RNA folding positive regulation of RNA splicing cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
misfolded RNA binding rRNA binding tRNA binding structural constituent of ribosome
Cellular location:
ribosome cytosol cytoplasm cytosolic small ribosomal subunit
maintenance of translational fidelity Group I intron splicing response to antibiotic RNA folding positive regulation of RNA splicing cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
misfolded RNA binding rRNA binding tRNA binding structural constituent of ribosome
Cellular location:
ribosome cytosol cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
30S ribosomal protein S13
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
tRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosol small ribosomal subunit cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
tRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosol small ribosomal subunit cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
30S ribosomal protein S14
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
tRNA binding rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm small ribosomal subunit cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
tRNA binding rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm small ribosomal subunit cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
30S ribosomal protein S15
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation ribosomal small subunit assembly translation
Molecular function:
mRNA base-pairing translational repressor activity small ribosomal subunit rRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
cytoplasmic translation ribosomal small subunit assembly translation
Molecular function:
mRNA base-pairing translational repressor activity small ribosomal subunit rRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
30S ribosomal protein S16
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
four-way junction DNA binding DNA endonuclease activity structural constituent of ribosome
Cellular location:
cytoplasm small ribosomal subunit cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
four-way junction DNA binding DNA endonuclease activity structural constituent of ribosome
Cellular location:
cytoplasm small ribosomal subunit cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
30S ribosomal protein S17
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [11]
Biological process:
response to antibiotic cytoplasmic translation ribosomal small subunit assembly translation
Molecular function:
small ribosomal subunit rRNA binding molecular adaptor activity zinc ion binding rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic small ribosomal subunit
response to antibiotic cytoplasmic translation ribosomal small subunit assembly translation
Molecular function:
small ribosomal subunit rRNA binding molecular adaptor activity zinc ion binding rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
30S ribosomal protein S18
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
small ribosomal subunit rRNA binding mRNA 5'-UTR binding rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
small ribosomal subunit rRNA binding mRNA 5'-UTR binding rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
30S ribosomal protein S19
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
tRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
tRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
30S ribosomal protein S20
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [11]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
small ribosomal subunit rRNA binding ornithine decarboxylase inhibitor activity rRNA binding structural constituent of ribosome
Cellular location:
small ribosomal subunit cytoplasm cytosol cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
small ribosomal subunit rRNA binding ornithine decarboxylase inhibitor activity rRNA binding structural constituent of ribosome
Cellular location:
small ribosomal subunit cytoplasm cytosol cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
30S ribosomal protein S21
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
rRNA binding structural constituent of ribosome hydrolase activity
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
rRNA binding structural constituent of ribosome hydrolase activity
Cellular location:
cytoplasm cytosol cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 8 kDa | - |
50S ribosomal protein L2
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [13]
Biological process:
negative regulation of DNA-templated DNA replication initiation ribosomal large subunit assembly cytoplasmic translation negative regulation of DNA-dependent DNA replication initiation
Molecular function:
transferase activity zinc ion binding rRNA binding structural constituent of ribosome RNA binding
Cellular location:
cytoplasm cytosol DnaA-L2 complex cytosolic large ribosomal subunit
negative regulation of DNA-templated DNA replication initiation ribosomal large subunit assembly cytoplasmic translation negative regulation of DNA-dependent DNA replication initiation
Molecular function:
transferase activity zinc ion binding rRNA binding structural constituent of ribosome RNA binding
Cellular location:
cytoplasm cytosol DnaA-L2 complex cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 29 kDa | - |
50S ribosomal protein L3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 22 kDa | - |
50S ribosomal protein L4
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [24]
Biological process:
negative regulation of DNA-templated transcription DNA-templated transcription termination cytoplasmic translation transcriptional attenuation negative regulation of cytoplasmic translation negative regulation of endoribonuclease activity negative regulation of transcription, DNA-templated translation response to antibiotic negative regulation of translation DNA-templated transcription, termination ribosome assembly
Molecular function:
DNA binding RNA-binding transcription regulator activity mRNA 5'-UTR binding rRNA binding endoribonuclease inhibitor activity translation repressor activity structural constituent of ribosome
Cellular location:
polysomal ribosome cytosol large ribosomal subunit cytoplasm cytosolic large ribosomal subunit
negative regulation of DNA-templated transcription DNA-templated transcription termination cytoplasmic translation transcriptional attenuation negative regulation of cytoplasmic translation negative regulation of endoribonuclease activity negative regulation of transcription, DNA-templated translation response to antibiotic negative regulation of translation DNA-templated transcription, termination ribosome assembly
Molecular function:
DNA binding RNA-binding transcription regulator activity mRNA 5'-UTR binding rRNA binding endoribonuclease inhibitor activity translation repressor activity structural constituent of ribosome
Cellular location:
polysomal ribosome cytosol large ribosomal subunit cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 22 kDa | - |
50S ribosomal protein L5
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
5S rRNA binding RNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
5S rRNA binding RNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 20 kDa | - |
50S ribosomal protein L6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
response to antibiotic cytoplasmic translation ribosomal large subunit assembly
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
response to antibiotic cytoplasmic translation ribosomal large subunit assembly
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 18 kDa | - |
50S ribosomal protein L9
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome large ribosomal subunit rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome large ribosomal subunit rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
50S ribosomal protein L13
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [12]
Biological process:
cytoplasmic translation translation negative regulation of translation
Molecular function:
mRNA 5'-UTR binding zinc ion binding structural constituent of ribosome mRNA binding large ribosomal subunit rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm ribosome
cytoplasmic translation translation negative regulation of translation
Molecular function:
mRNA 5'-UTR binding zinc ion binding structural constituent of ribosome mRNA binding large ribosomal subunit rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm ribosome
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 16 kDa | - |
50S ribosomal protein L14
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome large ribosomal subunit rRNA binding
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome large ribosomal subunit rRNA binding
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
50S ribosomal protein L15
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
50S ribosomal protein L16
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
rRNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
rRNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
50S ribosomal protein L17
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol large ribosomal subunit cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol large ribosomal subunit cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
50S ribosomal protein L18
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome 5S rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm cytosol
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome 5S rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
50S ribosomal protein L19
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm cytosol
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
50S ribosomal protein L20
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [11]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
mRNA regulatory element binding translation repressor activity mRNA binding structural constituent of ribosome large ribosomal subunit rRNA binding translation repressor activity, mRNA regulatory element binding
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
mRNA regulatory element binding translation repressor activity mRNA binding structural constituent of ribosome large ribosomal subunit rRNA binding translation repressor activity, mRNA regulatory element binding
Cellular location:
cytoplasm cytosol cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
50S ribosomal protein L21
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm
cytoplasmic translation translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
50S ribosomal protein L22
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [15]
Biological process:
cytosolic ribosome assembly assembly of large subunit precursor of preribosome mature ribosome assembly cytoplasmic translation translation ribosome assembly response to antibiotic
Molecular function:
large ribosomal subunit rRNA binding rRNA binding structural constituent of ribosome
Cellular location:
polysomal ribosome cytoplasm large ribosomal subunit cytosol cytosolic large ribosomal subunit
cytosolic ribosome assembly assembly of large subunit precursor of preribosome mature ribosome assembly cytoplasmic translation translation ribosome assembly response to antibiotic
Molecular function:
large ribosomal subunit rRNA binding rRNA binding structural constituent of ribosome
Cellular location:
polysomal ribosome cytoplasm large ribosomal subunit cytosol cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
50S ribosomal protein L23
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
50S ribosomal protein L24
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
50S ribosomal protein L25
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly response to radiation negative regulation of translation
Molecular function:
structural constituent of ribosome 5S rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
cytoplasmic translation translation ribosomal large subunit assembly response to radiation negative regulation of translation
Molecular function:
structural constituent of ribosome 5S rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
50S ribosomal protein L27
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [14]
Biological process:
cytosolic ribosome assembly cytoplasmic translation ribosomal large subunit assembly regulation of cell growth positive regulation of ribosome biogenesis assembly of large subunit precursor of preribosome translation mature ribosome assembly
Molecular function:
tRNA binding ribosome binding structural constituent of ribosome rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm
cytosolic ribosome assembly cytoplasmic translation ribosomal large subunit assembly regulation of cell growth positive regulation of ribosome biogenesis assembly of large subunit precursor of preribosome translation mature ribosome assembly
Molecular function:
tRNA binding ribosome binding structural constituent of ribosome rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
50S ribosomal protein L28
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
50S ribosomal protein L29
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 7 kDa | - |
50S ribosomal protein L30
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 6 kDa | - |
50S ribosomal protein L32
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation response to radiation translation response to reactive oxygen species ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
cytoplasmic translation response to radiation translation response to reactive oxygen species ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 6 kDa | - |
50S ribosomal protein L33
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation response to antibiotic
Molecular function:
structural constituent of ribosome tRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm large ribosomal subunit cytosol
cytoplasmic translation ribosomal large subunit assembly translation response to antibiotic
Molecular function:
structural constituent of ribosome tRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm large ribosomal subunit cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 6 kDa | - |
50S ribosomal protein L34
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 5 kDa | - |
50S ribosomal protein L35
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
large ribosomal subunit cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
large ribosomal subunit cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 7 kDa | - |
50S ribosomal protein L36
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit ribonucleoprotein complex ribosome
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit ribonucleoprotein complex ribosome
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 5 kDa | - |
50S ribosomal protein L31
Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Name: Number of copies: 1
UniProtKB UniProtKB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [13]
Biological process:
cytoplasmic translation negative regulation of cytoplasmic translational initiation translational initiation translation
Molecular function:
zinc ion binding metal ion binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol ribonucleoprotein complex ribosome
cytoplasmic translation negative regulation of cytoplasmic translational initiation translational initiation translation
Molecular function:
zinc ion binding metal ion binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol ribonucleoprotein complex ribosome
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 7 kDa | - |
DNA-directed RNA polymerase subunit alpha
EC number: 2.7.7.6
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Name: EC number: 2.7.7.6
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [25]
Biological process:
intracellular iron ion homeostasis DNA-templated transcription initiation regulation of DNA-templated transcription initiation DNA-templated transcription regulation of DNA-templated transcription elongation bacterial-type flagellum assembly bacterial-type flagellum-dependent cell motility response to heat iron ion homeostasis regulation of DNA-templated transcription, elongation submerged biofilm formation nitrate assimilation cell motility cellular response to cell envelope stress transcription antitermination regulation of DNA-templated transcription, initiation transcription, DNA-templated
Molecular function:
DNA binding DNA-directed 5'-3' RNA polymerase activity protein dimerization activity
Cellular location:
transcription elongation factor complex cytoplasm cytosol membrane cytosolic DNA-directed RNA polymerase complex
intracellular iron ion homeostasis DNA-templated transcription initiation regulation of DNA-templated transcription initiation DNA-templated transcription regulation of DNA-templated transcription elongation bacterial-type flagellum assembly bacterial-type flagellum-dependent cell motility response to heat iron ion homeostasis regulation of DNA-templated transcription, elongation submerged biofilm formation nitrate assimilation cell motility cellular response to cell envelope stress transcription antitermination regulation of DNA-templated transcription, initiation transcription, DNA-templated
Molecular function:
DNA binding DNA-directed 5'-3' RNA polymerase activity protein dimerization activity
Cellular location:
transcription elongation factor complex cytoplasm cytosol membrane cytosolic DNA-directed RNA polymerase complex
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 36 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
DNA-directed RNA polymerase subunit beta
EC number: 2.7.7.6
Number of copies: 1
UniProtKB UniProtKB UniProtKB PDBe-KB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB AlphaFold DB
Name: EC number: 2.7.7.6
Number of copies: 1
UniProtKB UniProtKB UniProtKB PDBe-KB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB AlphaFold DB
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 150 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
DNA-directed RNA polymerase subunit beta'
EC number: 2.7.7.6
Number of copies: 1
UniProtKB UniProtKB UniProtKB PDBe-KB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB AlphaFold DB
Name: EC number: 2.7.7.6
Number of copies: 1
UniProtKB UniProtKB UniProtKB PDBe-KB PDBe-KB PDBe-KB AlphaFold DB AlphaFold DB AlphaFold DB
Domains
Gene Ontology [22]
Biological process:
response to heat cell motility bacterial-type flagellum assembly response to antibiotic transcription antitermination bacterial-type flagellum-dependent cell motility regulation of DNA-templated transcription elongation cellular response to cell envelope stress submerged biofilm formation DNA-templated transcription initiation intracellular iron ion homeostasis nitrate assimilation regulation of DNA-templated transcription initiation
Molecular function:
DNA-directed 5'-3' RNA polymerase activity DNA binding magnesium ion binding zinc ion binding
Cellular location:
membrane cytosol cytoplasm cytosolic DNA-directed RNA polymerase complex transcription elongation factor complex
response to heat cell motility bacterial-type flagellum assembly response to antibiotic transcription antitermination bacterial-type flagellum-dependent cell motility regulation of DNA-templated transcription elongation cellular response to cell envelope stress submerged biofilm formation DNA-templated transcription initiation intracellular iron ion homeostasis nitrate assimilation regulation of DNA-templated transcription initiation
Molecular function:
DNA-directed 5'-3' RNA polymerase activity DNA binding magnesium ion binding zinc ion binding
Cellular location:
membrane cytosol cytoplasm cytosolic DNA-directed RNA polymerase complex transcription elongation factor complex
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 155 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
DNA-directed RNA polymerase subunit omega
EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [24]
Biological process:
intracellular iron ion homeostasis DNA-templated transcription initiation regulation of DNA-templated transcription initiation regulation of DNA-templated transcription elongation DNA-templated transcription response to heat submerged biofilm formation regulation of DNA-templated transcription, elongation nitrate assimilation iron ion homeostasis cellular response to cell envelope stress bacterial-type flagellum assembly bacterial-type flagellum-dependent cell motility cell motility regulation of DNA-templated transcription, initiation protein-containing complex assembly transcription antitermination transcription, DNA-templated
Molecular function:
DNA binding DNA-directed 5'-3' RNA polymerase activity
Cellular location:
transcription elongation factor complex cytosolic DNA-directed RNA polymerase complex RNA polymerase complex cytosol
intracellular iron ion homeostasis DNA-templated transcription initiation regulation of DNA-templated transcription initiation regulation of DNA-templated transcription elongation DNA-templated transcription response to heat submerged biofilm formation regulation of DNA-templated transcription, elongation nitrate assimilation iron ion homeostasis cellular response to cell envelope stress bacterial-type flagellum assembly bacterial-type flagellum-dependent cell motility cell motility regulation of DNA-templated transcription, initiation protein-containing complex assembly transcription antitermination transcription, DNA-templated
Molecular function:
DNA binding DNA-directed 5'-3' RNA polymerase activity
Cellular location:
transcription elongation factor complex cytosolic DNA-directed RNA polymerase complex RNA polymerase complex cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
Non-template DNA strand
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: synthetic construct
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
Template DNA strand
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: synthetic construct
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
MAGNESIUM ION
HET code: MG
Number of copies: 487
ChEBI DrugBank
Name: HET code: MG
Number of copies: 487
ChEBI DrugBank
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 24 Da | - |
PHENYLALANINE
HET code: PHE
Number of copies: 1
ChEMBL ChEBI DrugBank
Name:
Name: HET code: PHE
Number of copies: 1
ChEMBL ChEBI DrugBank
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 165 Da | - |