EMD-11419

Single-particle
3.5 Å
EMD-11419 Deposition: 20/07/2020
Map released: 16/09/2020
Last modified: 23/09/2020
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-11419

E. coli 70S-RNAP expressome complex in collided state bound to NusG

EMD-11419

Single-particle
3.5 Å
EMD-11419 Deposition: 20/07/2020
Map released: 16/09/2020
Last modified: 23/09/2020
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Name: E. coli 70S-RNAP expressome complex in collided state bound to NusG
Summary:
RNA [6]
Name: 16S ribosomal RNA
Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 499 kDa -
Name: mRNA
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: tRNA(fmet) P-site
Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: Phe-NH-tRNA(Phe) A-site
Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: 23S ribosomal RNA
Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 941 kDa -
Name: 5S ribosomal RNA
Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 38 kDa -
Protein [53]
Name: 30S ribosomal protein S2
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 26 kDa -
Name: 30S ribosomal protein S3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 26 kDa -
Name: 30S ribosomal protein S4
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 23 kDa -
Name: 30S ribosomal protein S5
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 17 kDa -
Name: 30S ribosomal protein S6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
ribonucleoprotein complex ribosome cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: 30S ribosomal protein S7
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [2]
Biological process:
translation
Molecular function:
structural constituent of ribosome
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 17 kDa -
Name: 30S ribosomal protein S8
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: 30S ribosomal protein S9
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: 30S ribosomal protein S10
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: 30S ribosomal protein S11
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: 30S ribosomal protein S12
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: 30S ribosomal protein S13
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: 30S ribosomal protein S14
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: 30S ribosomal protein S15
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 10 kDa -
Name: 30S ribosomal protein S16
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: 30S ribosomal protein S17
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: 30S ribosomal protein S18
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: 30S ribosomal protein S19
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 10 kDa -
Name: 30S ribosomal protein S20
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: 30S ribosomal protein S21
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 8 kDa -
Name: 50S ribosomal protein L2
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 29 kDa -
Name: 50S ribosomal protein L3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 22 kDa -
Name: 50S ribosomal protein L4
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 22 kDa -
Name: 50S ribosomal protein L5
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 20 kDa -
Name: 50S ribosomal protein L6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 18 kDa -
Name: 50S ribosomal protein L9
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: 50S ribosomal protein L13
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 16 kDa -
Name: 50S ribosomal protein L14
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: 50S ribosomal protein L15
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: 50S ribosomal protein L16
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: 50S ribosomal protein L17
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: 50S ribosomal protein L18
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 12 kDa -
Name: 50S ribosomal protein L19
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: 50S ribosomal protein L20
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: 50S ribosomal protein L21
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: 50S ribosomal protein L22
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 12 kDa -
Name: 50S ribosomal protein L23
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: 50S ribosomal protein L24
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: 50S ribosomal protein L25
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 10 kDa -
Name: 50S ribosomal protein L27
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: 50S ribosomal protein L28
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: 50S ribosomal protein L29
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 7 kDa -
Name: 50S ribosomal protein L30
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 6 kDa -
Name: 50S ribosomal protein L32
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 6 kDa -
Name: 50S ribosomal protein L33
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 6 kDa -
Name: 50S ribosomal protein L34
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 5 kDa -
Name: 50S ribosomal protein L35
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 7 kDa -
Name: 50S ribosomal protein L36
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [4]
Biological process:
translation
Molecular function:
structural constituent of ribosome
Cellular location:
ribonucleoprotein complex ribosome
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 5 kDa -
Name: DNA-directed RNA polymerase subunit alpha
EC number: 2.7.7.6
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 36 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli BL21(DE3) - - -
Name: DNA-directed RNA polymerase subunit beta
EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 150 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli BL21(DE3) - - -
Name: DNA-directed RNA polymerase subunit beta'
EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 155 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli BL21(DE3) - - -
Name: DNA-directed RNA polymerase subunit omega
EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 10 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli BL21(DE3) - - -
Name: Transcription termination/antitermination protein NusG
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Escherichia coli
Molecular weight
Experimental Theoretical Method
- 20 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli BL21(DE3) - - -
DNA [2]
DNA
Name: Non-template DNA strand
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 12 kDa -
DNA
Name: Template DNA strand
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Ligand [3]
Name: MAGNESIUM ION
HET code: MG
Number of copies: 441
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 24 Da -
Name: PHENYLALANINE
HET code: PHE
Number of copies: 1
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 165 Da -
Name: ZINC ION
HET code: ZN
Number of copies: 3
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 65 Da -