EMD-11419
E. coli 70S-RNAP expressome complex in collided state bound to NusG
EMD-11419
Single-particle3.5 Å
Deposition: 20/07/2020
Map released: 16/09/2020
Last modified: 23/09/2020
Name: E. coli 70S-RNAP expressome complex in collided state bound to NusG
Summary:
- Complex
- E. coli 70S-RNAP expressome complex in collided state bound to NusG
- 70S ribosome within the collided E. coli expressome
- DNA-directed RNA polymerase within the collided E. coli expressome
- synthetic mRNA and template DNA
- RNA
- Protein
- 30S ribosomal protein S2
- 30S ribosomal protein S3
- 30S ribosomal protein S4
- 30S ribosomal protein S5
- 30S ribosomal protein S6
- 30S ribosomal protein S7
- 30S ribosomal protein S8
- 30S ribosomal protein S9
- 30S ribosomal protein S10
- 30S ribosomal protein S11
- 30S ribosomal protein S12
- 30S ribosomal protein S13
- 30S ribosomal protein S14
- 30S ribosomal protein S15
- 30S ribosomal protein S16
- 30S ribosomal protein S17
- 30S ribosomal protein S18
- 30S ribosomal protein S19
- 30S ribosomal protein S20
- 30S ribosomal protein S21
- 50S ribosomal protein L2
- 50S ribosomal protein L3
- 50S ribosomal protein L4
- 50S ribosomal protein L5
- 50S ribosomal protein L6
- 50S ribosomal protein L9
- 50S ribosomal protein L13
- 50S ribosomal protein L14
- 50S ribosomal protein L15
- 50S ribosomal protein L16
- 50S ribosomal protein L17
- 50S ribosomal protein L18
- 50S ribosomal protein L19
- 50S ribosomal protein L20
- 50S ribosomal protein L21
- 50S ribosomal protein L22
- 50S ribosomal protein L23
- 50S ribosomal protein L24
- 50S ribosomal protein L25
- 50S ribosomal protein L27
- 50S ribosomal protein L28
- 50S ribosomal protein L29
- 50S ribosomal protein L30
- 50S ribosomal protein L32
- 50S ribosomal protein L33
- 50S ribosomal protein L34
- 50S ribosomal protein L35
- 50S ribosomal protein L36
- DNA-directed RNA polymerase subunit alpha
- DNA-directed RNA polymerase subunit beta
- DNA-directed RNA polymerase subunit beta'
- DNA-directed RNA polymerase subunit omega
- Transcription termination/antitermination protein NusG
- DNA
- Ligand
Name:
Name:
DNA-directed RNA polymerase within the collided E. coli expressome
Name: Natural source [1]
Organism: Escherichia coli
Recombinant Expression [1]
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | pEcrpoABC(-XH)Z |
Complex Portal [7]
synthetic mRNA and template DNA
Name: Natural source [1]
Organism: synthetic construct
Recombinant Expression [1]
Organism | Strain | Cell | Plasmid |
---|---|---|---|
synthetic construct | - | - | - |
16S ribosomal RNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 499 kDa | - |
mRNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: synthetic construct
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
tRNA(fmet) P-site
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 24 kDa | - |
Phe-NH-tRNA(Phe) A-site
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 24 kDa | - |
23S ribosomal RNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 941 kDa | - |
5S ribosomal RNA
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 38 kDa | - |
30S ribosomal protein S2
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
structural constituent of ribosome zinc ion binding
Cellular location:
cytoplasm cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
structural constituent of ribosome zinc ion binding
Cellular location:
cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 26 kDa | - |
30S ribosomal protein S3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
rRNA binding mRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
rRNA binding mRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 26 kDa | - |
30S ribosomal protein S4
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [19]
Biological process:
ribosomal small subunit biogenesis DNA-templated transcription termination cytoplasmic translation maintenance of translational fidelity DNA-templated transcription, termination negative regulation of translational initiation positive regulation of translational fidelity response to antibiotic ribosomal small subunit assembly transcription antitermination
Molecular function:
mRNA regulatory element binding translation repressor activity structural constituent of ribosome rRNA binding mRNA 5'-UTR binding translation repressor activity, mRNA regulatory element binding
Cellular location:
small ribosomal subunit cytoplasm cytosol cytosolic small ribosomal subunit
ribosomal small subunit biogenesis DNA-templated transcription termination cytoplasmic translation maintenance of translational fidelity DNA-templated transcription, termination negative regulation of translational initiation positive regulation of translational fidelity response to antibiotic ribosomal small subunit assembly transcription antitermination
Molecular function:
mRNA regulatory element binding translation repressor activity structural constituent of ribosome rRNA binding mRNA 5'-UTR binding translation repressor activity, mRNA regulatory element binding
Cellular location:
small ribosomal subunit cytoplasm cytosol cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 23 kDa | - |
30S ribosomal protein S5
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation maintenance of translational fidelity ribosomal small subunit assembly response to antibiotic
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytosol cytoplasm
cytoplasmic translation translation maintenance of translational fidelity ribosomal small subunit assembly response to antibiotic
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytosol cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 17 kDa | - |
30S ribosomal protein S6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
ribonucleoprotein complex ribosome cytoplasm
translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
ribonucleoprotein complex ribosome cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
30S ribosomal protein S7
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [2]
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 17 kDa | - |
30S ribosomal protein S8
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation regulation of mRNA stability ribosomal small subunit assembly regulation of translation translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
cytoplasmic translation regulation of mRNA stability ribosomal small subunit assembly regulation of translation translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
30S ribosomal protein S9
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation
Molecular function:
tRNA binding structural constituent of ribosome RNA binding
Cellular location:
cytosolic small ribosomal subunit small ribosomal subunit cytoplasm cytosol
cytoplasmic translation translation
Molecular function:
tRNA binding structural constituent of ribosome RNA binding
Cellular location:
cytosolic small ribosomal subunit small ribosomal subunit cytoplasm cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
30S ribosomal protein S10
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [14]
Biological process:
regulation of DNA-templated transcription elongation regulation of DNA-templated transcription, elongation cytoplasmic translation transcription antitermination translation ribosome biogenesis
Molecular function:
structural constituent of ribosome transcription antitermination factor activity, RNA binding tRNA binding
Cellular location:
transcription elongation factor complex small ribosomal subunit cytoplasm cytosolic small ribosomal subunit cytosol
regulation of DNA-templated transcription elongation regulation of DNA-templated transcription, elongation cytoplasmic translation transcription antitermination translation ribosome biogenesis
Molecular function:
structural constituent of ribosome transcription antitermination factor activity, RNA binding tRNA binding
Cellular location:
transcription elongation factor complex small ribosomal subunit cytoplasm cytosolic small ribosomal subunit cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
30S ribosomal protein S11
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Molecular function:
small ribosomal subunit rRNA binding structural constituent of ribosome mRNA 5'-UTR binding
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Molecular function:
small ribosomal subunit rRNA binding structural constituent of ribosome mRNA 5'-UTR binding
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
30S ribosomal protein S12
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [17]
Biological process:
cytoplasmic translation Group I intron splicing maintenance of translational fidelity response to antibiotic RNA folding positive regulation of RNA splicing translation
Molecular function:
molecular adaptor activity DNA binding tRNA binding rRNA binding structural constituent of ribosome misfolded RNA binding
Cellular location:
cytosol ribosome cytosolic small ribosomal subunit cytoplasm
cytoplasmic translation Group I intron splicing maintenance of translational fidelity response to antibiotic RNA folding positive regulation of RNA splicing translation
Molecular function:
molecular adaptor activity DNA binding tRNA binding rRNA binding structural constituent of ribosome misfolded RNA binding
Cellular location:
cytosol ribosome cytosolic small ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
30S ribosomal protein S13
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation
Molecular function:
rRNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytosol cytoplasm small ribosomal subunit
cytoplasmic translation translation
Molecular function:
rRNA binding tRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytosol cytoplasm small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
30S ribosomal protein S14
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
tRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosolic small ribosomal subunit small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
tRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosolic small ribosomal subunit small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
30S ribosomal protein S15
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [13]
Biological process:
cytoplasmic translation ribosomal small subunit assembly regulation of translation translation
Molecular function:
mRNA base-pairing translational repressor activity mRNA base-pairing post-transcriptional repressor activity small ribosomal subunit rRNA binding mRNA binding involved in posttranscriptional gene silencing rRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytoplasm cytosol
cytoplasmic translation ribosomal small subunit assembly regulation of translation translation
Molecular function:
mRNA base-pairing translational repressor activity mRNA base-pairing post-transcriptional repressor activity small ribosomal subunit rRNA binding mRNA binding involved in posttranscriptional gene silencing rRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytoplasm cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
30S ribosomal protein S16
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
DNA endonuclease activity four-way junction DNA binding endodeoxyribonuclease activity structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit small ribosomal subunit cytoplasm
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
DNA endonuclease activity four-way junction DNA binding endodeoxyribonuclease activity structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit small ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
30S ribosomal protein S17
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [11]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly response to antibiotic
Molecular function:
zinc ion binding molecular adaptor activity rRNA binding structural constituent of ribosome small ribosomal subunit rRNA binding
Cellular location:
cytoplasm cytosolic small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly response to antibiotic
Molecular function:
zinc ion binding molecular adaptor activity rRNA binding structural constituent of ribosome small ribosomal subunit rRNA binding
Cellular location:
cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
30S ribosomal protein S18
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation translation
Molecular function:
small ribosomal subunit rRNA binding mRNA 5'-UTR binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
cytoplasmic translation translation
Molecular function:
small ribosomal subunit rRNA binding mRNA 5'-UTR binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
30S ribosomal protein S19
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
structural constituent of ribosome tRNA binding rRNA binding
Cellular location:
cytosol cytosolic small ribosomal subunit cytoplasm
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
structural constituent of ribosome tRNA binding rRNA binding
Cellular location:
cytosol cytosolic small ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
30S ribosomal protein S20
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
ornithine decarboxylase inhibitor activity small ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytosol cytoplasm small ribosomal subunit
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
ornithine decarboxylase inhibitor activity small ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic small ribosomal subunit cytosol cytoplasm small ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
30S ribosomal protein S21
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosolic small ribosomal subunit cytosol cytoplasm
cytoplasmic translation translation ribosomal small subunit assembly
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosolic small ribosomal subunit cytosol cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 8 kDa | - |
50S ribosomal protein L2
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [13]
Biological process:
negative regulation of DNA-templated DNA replication initiation cytoplasmic translation ribosomal large subunit assembly negative regulation of DNA-dependent DNA replication initiation
Molecular function:
transferase activity RNA binding structural constituent of ribosome zinc ion binding rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm DnaA-L2 complex
negative regulation of DNA-templated DNA replication initiation cytoplasmic translation ribosomal large subunit assembly negative regulation of DNA-dependent DNA replication initiation
Molecular function:
transferase activity RNA binding structural constituent of ribosome zinc ion binding rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm DnaA-L2 complex
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 29 kDa | - |
50S ribosomal protein L3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 22 kDa | - |
50S ribosomal protein L4
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [24]
Biological process:
DNA-templated transcription termination negative regulation of DNA-templated transcription cytoplasmic translation negative regulation of cytoplasmic translation transcriptional attenuation negative regulation of endoribonuclease activity response to antibiotic negative regulation of translation translation negative regulation of transcription, DNA-templated ribosome assembly DNA-templated transcription, termination
Molecular function:
DNA binding mRNA 5'-UTR binding RNA-binding transcription regulator activity structural constituent of ribosome rRNA binding endoribonuclease inhibitor activity translation repressor activity
Cellular location:
polysomal ribosome cytoplasm large ribosomal subunit cytosol cytosolic large ribosomal subunit
DNA-templated transcription termination negative regulation of DNA-templated transcription cytoplasmic translation negative regulation of cytoplasmic translation transcriptional attenuation negative regulation of endoribonuclease activity response to antibiotic negative regulation of translation translation negative regulation of transcription, DNA-templated ribosome assembly DNA-templated transcription, termination
Molecular function:
DNA binding mRNA 5'-UTR binding RNA-binding transcription regulator activity structural constituent of ribosome rRNA binding endoribonuclease inhibitor activity translation repressor activity
Cellular location:
polysomal ribosome cytoplasm large ribosomal subunit cytosol cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 22 kDa | - |
50S ribosomal protein L5
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome RNA binding tRNA binding 5S rRNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome RNA binding tRNA binding 5S rRNA binding
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 20 kDa | - |
50S ribosomal protein L6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation ribosomal large subunit assembly response to antibiotic
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm cytosol
cytoplasmic translation ribosomal large subunit assembly response to antibiotic
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 18 kDa | - |
50S ribosomal protein L9
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
cytoplasmic translation translation
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
50S ribosomal protein L13
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [12]
Biological process:
cytoplasmic translation negative regulation of translation translation
Molecular function:
mRNA 5'-UTR binding zinc ion binding mRNA binding large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm ribosome
cytoplasmic translation negative regulation of translation translation
Molecular function:
mRNA 5'-UTR binding zinc ion binding mRNA binding large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytosol cytoplasm ribosome
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 16 kDa | - |
50S ribosomal protein L14
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm cytosol
cytoplasmic translation translation
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
50S ribosomal protein L15
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
50S ribosomal protein L16
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
tRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
tRNA binding structural constituent of ribosome rRNA binding
Cellular location:
cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 15 kDa | - |
50S ribosomal protein L17
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
structural constituent of ribosome
Cellular location:
large ribosomal subunit cytoplasm cytosolic large ribosomal subunit cytosol
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
structural constituent of ribosome
Cellular location:
large ribosomal subunit cytoplasm cytosolic large ribosomal subunit cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 14 kDa | - |
50S ribosomal protein L18
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
5S rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation
Molecular function:
5S rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
50S ribosomal protein L19
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome large ribosomal subunit rRNA binding
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome large ribosomal subunit rRNA binding
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
50S ribosomal protein L20
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [11]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
mRNA regulatory element binding translation repressor activity large ribosomal subunit rRNA binding translation repressor activity, mRNA regulatory element binding mRNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
mRNA regulatory element binding translation repressor activity large ribosomal subunit rRNA binding translation repressor activity, mRNA regulatory element binding mRNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 13 kDa | - |
50S ribosomal protein L21
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
50S ribosomal protein L22
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [15]
Biological process:
cytosolic ribosome assembly mature ribosome assembly cytoplasmic translation assembly of large subunit precursor of preribosome ribosome assembly translation response to antibiotic
Molecular function:
large ribosomal subunit rRNA binding rRNA binding structural constituent of ribosome
Cellular location:
large ribosomal subunit polysomal ribosome cytoplasm cytosol cytosolic large ribosomal subunit
cytosolic ribosome assembly mature ribosome assembly cytoplasmic translation assembly of large subunit precursor of preribosome ribosome assembly translation response to antibiotic
Molecular function:
large ribosomal subunit rRNA binding rRNA binding structural constituent of ribosome
Cellular location:
large ribosomal subunit polysomal ribosome cytoplasm cytosol cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
50S ribosomal protein L23
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
50S ribosomal protein L24
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
large ribosomal subunit rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
50S ribosomal protein L25
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation response to radiation ribosomal large subunit assembly negative regulation of translation translation
Molecular function:
structural constituent of ribosome 5S rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
cytoplasmic translation response to radiation ribosomal large subunit assembly negative regulation of translation translation
Molecular function:
structural constituent of ribosome 5S rRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
50S ribosomal protein L27
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [14]
Biological process:
cytosolic ribosome assembly cytoplasmic translation translation regulation of cell growth positive regulation of ribosome biogenesis assembly of large subunit precursor of preribosome ribosomal large subunit assembly mature ribosome assembly
Molecular function:
rRNA binding structural constituent of ribosome ribosome binding tRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit
cytosolic ribosome assembly cytoplasmic translation translation regulation of cell growth positive regulation of ribosome biogenesis assembly of large subunit precursor of preribosome ribosomal large subunit assembly mature ribosome assembly
Molecular function:
rRNA binding structural constituent of ribosome ribosome binding tRNA binding
Cellular location:
cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
50S ribosomal protein L28
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytosol cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 9 kDa | - |
50S ribosomal protein L29
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation ribosomal large subunit assembly translation
Molecular function:
rRNA binding structural constituent of ribosome
Cellular location:
cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 7 kDa | - |
50S ribosomal protein L30
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation translation ribosomal large subunit assembly
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 6 kDa | - |
50S ribosomal protein L32
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [9]
Biological process:
cytoplasmic translation response to reactive oxygen species response to radiation ribosomal large subunit assembly translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
cytoplasmic translation response to reactive oxygen species response to radiation ribosomal large subunit assembly translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosol cytoplasm cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 6 kDa | - |
50S ribosomal protein L33
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [10]
Biological process:
cytoplasmic translation ribosomal large subunit assembly translation response to antibiotic
Molecular function:
tRNA binding structural constituent of ribosome
Cellular location:
large ribosomal subunit cytosolic large ribosomal subunit cytosol cytoplasm
cytoplasmic translation ribosomal large subunit assembly translation response to antibiotic
Molecular function:
tRNA binding structural constituent of ribosome
Cellular location:
large ribosomal subunit cytosolic large ribosomal subunit cytosol cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 6 kDa | - |
50S ribosomal protein L34
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytosolic large ribosomal subunit cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 5 kDa | - |
50S ribosomal protein L35
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [6]
Biological process:
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm large ribosomal subunit cytosolic large ribosomal subunit
cytoplasmic translation translation
Molecular function:
structural constituent of ribosome
Cellular location:
cytoplasm large ribosomal subunit cytosolic large ribosomal subunit
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 7 kDa | - |
50S ribosomal protein L36
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [4]
Biological process:
translation
Molecular function:
structural constituent of ribosome
Cellular location:
ribonucleoprotein complex ribosome
translation
Molecular function:
structural constituent of ribosome
Cellular location:
ribonucleoprotein complex ribosome
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 5 kDa | - |
DNA-directed RNA polymerase subunit alpha
EC number: 2.7.7.6
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Name: EC number: 2.7.7.6
Number of copies: 2
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [25]
Biological process:
intracellular iron ion homeostasis DNA-templated transcription initiation regulation of DNA-templated transcription initiation DNA-templated transcription regulation of DNA-templated transcription elongation cellular response to cell envelope stress nitrate assimilation response to heat bacterial-type flagellum assembly submerged biofilm formation iron ion homeostasis regulation of DNA-templated transcription, elongation cell motility bacterial-type flagellum-dependent cell motility transcription antitermination transcription, DNA-templated regulation of DNA-templated transcription, initiation
Molecular function:
DNA-directed 5'-3' RNA polymerase activity protein dimerization activity DNA binding
Cellular location:
transcription elongation factor complex cytoplasm cytosolic DNA-directed RNA polymerase complex membrane cytosol
intracellular iron ion homeostasis DNA-templated transcription initiation regulation of DNA-templated transcription initiation DNA-templated transcription regulation of DNA-templated transcription elongation cellular response to cell envelope stress nitrate assimilation response to heat bacterial-type flagellum assembly submerged biofilm formation iron ion homeostasis regulation of DNA-templated transcription, elongation cell motility bacterial-type flagellum-dependent cell motility transcription antitermination transcription, DNA-templated regulation of DNA-templated transcription, initiation
Molecular function:
DNA-directed 5'-3' RNA polymerase activity protein dimerization activity DNA binding
Cellular location:
transcription elongation factor complex cytoplasm cytosolic DNA-directed RNA polymerase complex membrane cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 36 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
DNA-directed RNA polymerase subunit beta
EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [26]
Biological process:
intracellular iron ion homeostasis DNA-templated transcription initiation DNA-templated transcription regulation of DNA-templated transcription elongation regulation of DNA-templated transcription initiation cell motility iron ion homeostasis bacterial-type flagellum-dependent cell motility nitrate assimilation regulation of DNA-templated transcription, elongation bacterial-type flagellum assembly response to heat cellular response to cell envelope stress submerged biofilm formation transcription, DNA-templated transcription antitermination regulation of DNA-templated transcription, initiation response to antibiotic
Molecular function:
DNA-directed 5'-3' RNA polymerase activity DNA binding ribonucleoside binding
Cellular location:
transcription elongation factor complex cytosol membrane cytosolic DNA-directed RNA polymerase complex cytoplasm
intracellular iron ion homeostasis DNA-templated transcription initiation DNA-templated transcription regulation of DNA-templated transcription elongation regulation of DNA-templated transcription initiation cell motility iron ion homeostasis bacterial-type flagellum-dependent cell motility nitrate assimilation regulation of DNA-templated transcription, elongation bacterial-type flagellum assembly response to heat cellular response to cell envelope stress submerged biofilm formation transcription, DNA-templated transcription antitermination regulation of DNA-templated transcription, initiation response to antibiotic
Molecular function:
DNA-directed 5'-3' RNA polymerase activity DNA binding ribonucleoside binding
Cellular location:
transcription elongation factor complex cytosol membrane cytosolic DNA-directed RNA polymerase complex cytoplasm
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 150 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
DNA-directed RNA polymerase subunit beta'
EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 155 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
DNA-directed RNA polymerase subunit omega
EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: EC number: 2.7.7.6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [24]
Biological process:
intracellular iron ion homeostasis DNA-templated transcription initiation regulation of DNA-templated transcription initiation DNA-templated transcription regulation of DNA-templated transcription elongation nitrate assimilation iron ion homeostasis cell motility bacterial-type flagellum assembly cellular response to cell envelope stress bacterial-type flagellum-dependent cell motility response to heat regulation of DNA-templated transcription, elongation submerged biofilm formation transcription antitermination protein-containing complex assembly transcription, DNA-templated regulation of DNA-templated transcription, initiation
Molecular function:
DNA-directed 5'-3' RNA polymerase activity DNA binding
Cellular location:
transcription elongation factor complex RNA polymerase complex cytosolic DNA-directed RNA polymerase complex cytosol
intracellular iron ion homeostasis DNA-templated transcription initiation regulation of DNA-templated transcription initiation DNA-templated transcription regulation of DNA-templated transcription elongation nitrate assimilation iron ion homeostasis cell motility bacterial-type flagellum assembly cellular response to cell envelope stress bacterial-type flagellum-dependent cell motility response to heat regulation of DNA-templated transcription, elongation submerged biofilm formation transcription antitermination protein-containing complex assembly transcription, DNA-templated regulation of DNA-templated transcription, initiation
Molecular function:
DNA-directed 5'-3' RNA polymerase activity DNA binding
Cellular location:
transcription elongation factor complex RNA polymerase complex cytosolic DNA-directed RNA polymerase complex cytosol
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 10 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
Transcription termination/antitermination protein NusG
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Name: Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Natural source
Organism: Escherichia coli
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 20 kDa | - |
Recombinant Expression
Organism | Strain | Cell | Plasmid |
---|---|---|---|
Escherichia coli BL21(DE3) | - | - | - |
Non-template DNA strand
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: synthetic construct
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 12 kDa | - |
Template DNA strand
Number of copies: 1
Name: Number of copies: 1
Natural source
Organism: synthetic construct
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 11 kDa | - |
MAGNESIUM ION
HET code: MG
Number of copies: 441
ChEBI DrugBank
Name: HET code: MG
Number of copies: 441
ChEBI DrugBank
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 24 Da | - |
PHENYLALANINE
HET code: PHE
Number of copies: 1
ChEMBL ChEBI DrugBank
Name:
Name: HET code: PHE
Number of copies: 1
ChEMBL ChEBI DrugBank
Molecular weight
Experimental | Theoretical | Method |
---|---|---|
- | 165 Da | - |